Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00025 ATGGCTTCGGATCCGAAGGTTCATCTTTTCGAAGAAGTGGCAAAGCACAACAAAACCAAAGATTGCTGGCTTGTTATCTCTGGGAAGGTTTATGATGTAACTCCTTTCATGGAGGATCATCCCGGAGGTGATGAAGTATTATTGTCAGCAACTGGAAAAGATGCCACAAACGATTTCGAAGATGTTGGGCACAGCGATTCAGCAAGAGAAATGATGGACAAATATTACATCGGAGAAATTGATCCTTCAACGGTTCCTTTGAAGAAGATTTTCATTCCATCACAACAATCACAGCACAACCCAGATAAGACACCTGAGTTTGTGATCAAGATCTTGCAGTTTTTGGTTCCCATTTTGATTTTGGGTTTGGCATTTGCTGTTCGACACTACACCAAGAATGAATAA 405 40.99 MASDPKVHLFEEVAKHNKTKDCWLVISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIFIPSQQSQHNPDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE* 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 116589 118084 - CsaV3_5G000250.1 Csa05g00025 528412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00025 134 PANTHER CYTOCHROME B5 1 132 - -
Csa05g00025 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 87 IPR036400 -
Csa05g00025 134 SMART Cyt_b5_2 8 81 IPR001199 -
Csa05g00025 134 PANTHER CYTOCHROME B5-LIKE 1 132 - -
Csa05g00025 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Csa05g00025 134 Gene3D - 1 86 IPR036400 -
Csa05g00025 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Csa05g00025 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Csa05g00025 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Csa05g00025 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Csa05g00025 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Csa05g00025 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00025 K23490 CYB5; cytochrome b5 - csv:101207109 277.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01102 Csa-Chr3:8715763 Csa05g00025 Csa-Chr5:116589 3.66E-66 dispersed
Csa03g02688 Csa-Chr3:25692835 Csa05g00025 Csa-Chr5:116589 3.81E-57 dispersed
Csa05g00025 Csa-Chr5:116589 Csa06g02086 Csa-Chr6:18617774 1.35E-32 dispersed
Csa06g00093 Csa-Chr6:619820 Csa05g00025 Csa-Chr5:116589 2.80E-11 transposed
Csa06g00897 Csa-Chr6:7204282 Csa05g00025 Csa-Chr5:116589 5.48E-43 transposed
Csa03g00777 Csa-Chr3:6794685 Csa05g00025 Csa-Chr5:116589 1.44E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g991 . . . Bda07g01952 . . . Bma14g02023 . . Cma02g01139 Cma15g01010 Car02g00943 Car15g00942 . Cpe05g00584 . . . . . . . . Cla01g00023 Cam01g0022 Cec01g0020 Cco01g0024 Clacu01g0023 Cmu01g0022 Cre09g2485 Cone1ag1008 Cone5ag0716 . . . Csa05g00025 Chy09g01458 . . Blo09g00007 . . . . . . . Cmo02g01170 Cmo15g01073 . . . . . Cpe13g00327 Bhi12g00682 . . . Hepe06g0817 . . . . . . . . . Lsi09g00003 . . Cme09g02007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00025 Csa_Chr05 FPKM 125.476387 139.52655 15.061123 12.362906 25.821732 25.258032 25.380844 24.246088 24.594309 25.603514