Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00033 ATGGCTGAACTGTTGGGGCCTCGTTTGTACAGCTGCTGTAATTGTAGGAACCATGTTGCCTTTCACGATGATATCATTTCTAAAGCTTTTCAGGGAAGGCATGGGCGTGCTTTTCTCTTCTCTCATGCTATGAACATCACAGTGGGACCAAAAGAAGACCGGCATCTCATGACGGGTCTCCACACTGTTGCTGATGTGCATTGTGTTGACTGCCGTGAGGTGCTCGGGTGGAAATATGAAAGGGCATATGAGGCATCTCAGAAGTACAAAGAAGGGAAGTTCATTCTTGAAAAATCAAAAATCGTTAGGGACAACTGGTAG 321 45.79 MAELLGPRLYSCCNCRNHVAFHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW* 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 157878 158468 - CsaV3_5G000330.1 Csa05g00033 528420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00033 106 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 106 IPR039058 -
Csa05g00033 106 PANTHER PROTEIN YIPPEE-LIKE 1 106 - -
Csa05g00033 106 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 10 101 IPR004910 -
Csa05g00033 106 ProSiteProfiles Yippee domain profile. 8 105 IPR034751 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00033 - - - csv:101205521 229.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00033 Csa-Chr5:157878 Csa06g00175 Csa-Chr6:1169247 8.86E-40 dispersed
Csa05g00033 Csa-Chr5:157878 Csa05g00034 Csa-Chr5:160273 1.03E-35 tandem
Csa03g00785 Csa-Chr3:6837347 Csa05g00033 Csa-Chr5:157878 2.03E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g220 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1005 . . . . . . . Bma14g02018 . . Cma02g01137 . Car02g00940 Car15g00947 . Cpe05g00587 . . . . . . . . . . . . . . . . Cone5ag0709 . . . Csa05g00033 Chy09g01451 . . . . Bda15g00792 . . Bma08g00395 . . Cmo02g01166 . . . . . . Cpe13g00323 Bhi12g00677 . . . Hepe06g0813 . . . . . . . . . Lsi09g00007 . . Cme09g02000
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002328 1 4 0 1 1 2 2 1 2 2 1 1 1 2 2 1 1 1 3 2 2 3 2 1 3 2 2 3 8 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00033 Csa_Chr05 FPKM 0.691489 0.0 0.0 0.381341 0.0 0.0 0.08352 0.469202 0.530522 0.222079