Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00035 ATGGAGATTTTCTACTTCTTGGTGTTTGGAGCATTGTCTCTAGTTGTTGTAGCTCTCGAGCTCACCAAAACCAACAAGGACCGGATCAATACACCATCCGCTTTCAATGCCTTCAAGAACAATTACCTTCTTGTTTATTCTCTTATGATGGCTGGGGACTGGTTGCAGGGCCCGTACGTATACTACCTTTACAGTCAGTATGGCTTTGGTAAAGGAGAGATCGGTCAGCTTTTCATTGCTGGTTTTGGGTCCTCCATGTTGTTTGGTACAATTGTTGGTTCTCTTGCTGACAAACAAGGTCGAAAGAGGGCTTGCATTACTTATTGTATTACATACATTCTGAGTTGCGTCACCAAGCATTCTCCTGAATACAAGGTTCTAATGTTGGGCCGTGTTTTGGGAGGTATTGCCACTTCGCTCCTATTTTCAGCATTTGAGTCATGGCTTGTTGCAGAGCACAATAAGAGGGGCTTTGAACAGCAATGGTTGTCTATTACATTCTCAAAGGCTATATTTCTTGGCAATGGTCTTGTTGCAATTATTGCTGGGTTGTTTGGGAATGTACTAGTCGATAGTCTGTCTCTTGGACCAGTGGCACCTTTTGATGCTGCTGCATGCTTTCTTGCAATTGGTATGGCCATTATTATGTCATCATGGACTGAAAACTATGGGGATCCATCAGAGAATAAGGATTTGCTCACCCAGTTCAGGGGGGCTGCTGTTGCGATTGCATCTGATGAGAAGATCGCACTGCTGGGTGCTATCCAGTCTCTATTTGAAGGTTCAATGTACACCTTTGTGTTCCTCTGGACACCTGCTCTTAGCCCAAATAATGAGGATATTCCCCATGGCTTTATCTTTGCGACATTCATGTTAGCTTCAATGCTTGGAAGTTCCCTTGCATCTAGGTTGATGGCTCGAAACACACCAAAAGTTGAGAGCTACATGCAGATTGTTTTTGTTGTCTCATCTGCCTCTCTTGTACTTCCAATTGTGACCAGTTTCTTGGTAGCTCCATCAGATGTGAAAGGTGGAAGCATCTCCTTCTCAGGCTGTATTCAGTTGCTTGGTTTCTGTGCTTTTGAGTCCTGCGTTGGCATATTTTGGCCTTCCATAATGAAGATGAGATCCCAGTACATCCCTGAGGAGGCTAGAAGTACTATCATGAACTTCTTCCGCATTCCTCTCAACATCTTCGTGTGTGTGGTGCTTTATAATGTGGATGCTTTCCCTATCACTGTGATGTTTGGCATGTGCTCCATTTTCCTTTTTGTGGCGTCGATCCTACAAAGGCGGCTTCAAGCAATCGTTGAGAAACCAAAGAGTGGAGACTGGGCATTAAGCGATAAGAATACCGAGGCAGATCCGTTAAACATCTAG 1380 44.2 MEIFYFLVFGALSLVVVALELTKTNKDRINTPSAFNAFKNNYLLVYSLMMAGDWLQGPYVYYLYSQYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCVTKHSPEYKVLMLGRVLGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAIIAGLFGNVLVDSLSLGPVAPFDAAACFLAIGMAIIMSSWTENYGDPSENKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNNEDIPHGFIFATFMLASMLGSSLASRLMARNTPKVESYMQIVFVVSSASLVLPIVTSFLVAPSDVKGGSISFSGCIQLLGFCAFESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLFVASILQRRLQAIVEKPKSGDWALSDKNTEADPLNI* 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 162609 166332 - CsaV3_5G000350.1 Csa05g00035 528422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00035 459 Gene3D MFS general substrate transporter like domains 41 431 IPR036259 -
Csa05g00035 459 PANTHER MOLYBDATE-ANION TRANSPORTER 1 459 - -
Csa05g00035 459 Pfam Sugar-tranasporters, 12 TM 4 358 IPR008509 GO:0015098|GO:0015689|GO:0016021
Csa05g00035 459 SUPERFAMILY MFS general substrate transporter 42 433 IPR036259 -
Csa05g00035 459 CDD MFS_MFSD5_like 35 431 - -
Csa05g00035 459 PANTHER SAM (S-ADENOSYL METHIONINE) TRANSPORTER 1 459 IPR008509 GO:0015098|GO:0015689|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00035 K24175 MFSD5; MFS transporter, MFS domain-containing protein family, molybdate-anion transporter - csv:101204554 898.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00035 Csa-Chr5:162609 Csa06g03836 Csa-Chr6:30386598 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g225 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00035 . . . . Bda07g01948 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001828 3 2 3 2 2 2 3 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00035 Csa_Chr05 FPKM 0.0 24.494883 9.160165 10.647667 0.0 0.0 0.0 10.975707 10.682903 8.15247