Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00043 ATGGCCACTTTCCTTCTTCTCTCTTCTCCATCTTACAGTCATTGCATTTGCAAAAGGGCATCAATCACATGCTCCTCAGTTTGCCTTCAGAAATGTAATATCAAGCTTTATGCGGTACCTGTTGGAGCTTTTTCTTGCCTCTCTGCATCAACACCTTCTGCTTCAAGTAGAGCTGCTTTTGGGGCTGAAAGGAAGCACGTTTCTTCTGCGTTCACTCCAATTGGGTATCAAAGGTCTGATCACATGCACTACCGTACTGATTGTAACACGGTGGCTGAATTTGAAGTTCAGTTGGAAGAATTACTCAATGAAGTCAGAACGTTGACCATGAGCGGGAGGAAGAGTGATGCTGTAGAGCTACTTCAAGCTAATTATGAAGCTGTAAAAGAACAAATGGAATCAGGCGCCGTTGGCATTGAACAAGCTGCTGTTCTTGACATCGTGGCTTTGGGGTATTTAACTGTTGGAGACTTGAAGTTTGTTGCTTCTGTGTTGGATATATTGAACAAGGTTGTTGACAGTCTGACAGACGGTGAACCCTTTCTGGATTCAGTGCTTCTGCATATGGGGAGCATGTACTCAACCTTAAAAAAGTTTGAGAAATCAATATCTGTGTACAAGAGAGCAATTGATATCATGGAGAAAAAATTTGGAGAAGACAGTAGCTTTCTTATCACTCCAATTTTAGGGATGGCTAAAGTTCTTGGTACCATTGGAAGAGCTGGAAAGGCAGTAGAGTGCTACAATCGTGCAATTTCACTTCTGGAATCAAGCAGAGGCTTTGAGAACGAGGATTTGGTTATACCTTTGATTAGTCTGGGCAATCTTATGCTCAAAGAAGGAAAAGGCAAGGATGCAGAAACATGTTTTGCAAGGATTGTGAACATATATGAAAAGTTATATGGAGAGAAAAATGGAAAAGTCGGAATGGCTATGTATTCTCTGGCTAATGCAAAATGTGCAAGAGGGGAAGCAGACGAAGCTGTTACCTTATGTAGAAGAGCTTTGGAGATTATCAAGGATTCAAATGATATTGCTTTAGATGACAGCACCATTGAGAAGATGAGGATTGATTTGGCAGAACTATTGCATGTTCTAGGAAGAGCGAATGAAGGCAGAGAACTTCTAGAAGAGTGTTTGTTGATCAATGAAAGGTTGAAAGGAAAAGAGCATCCCAGTTCAGTGAAGCACCTTGTAAACCTTGCCGCTTCTTATTCACGGTCAAAGAATTATGTGGAGGCTGAGCGTTTGTTGCGAATTGGATTGGATATTATGATAAAGGCAGTGGGATCTGATGATCAATCAATTACAGTCCCAATGTTGAATCTTGCTGTCACTCTTTACAATCTAAAACAGGACAATGATGCTGAGCAACTTGCGCTTGAAGTCTTGCGAATAAGGGAAAATGCTTTTGGAAAAGATTCACTTCCTGTTGGTGAAGCTCTAGATTGTTTGGTTTCGATTCAGAGCAGGCTAGGGAAGGATGAAAGTGAGCTACTGAAGCTGCTGAAGAGAATTCTTACAATCCAGGAGAAAGAGTTCGGGGAAGATGGTAAAGAGGTCATCGACACCCTCAAGAAAATAGTCTTCTGCATGGACAAACTGGGAATGAAAGATGAGAAATTTCTACTTCAAAAACGACTATCCATGCTGCGGATGAAATTCAAGAACCAGATGCGATACTAA 1686 41.28 MATFLLLSSPSYSHCICKRASITCSSVCLQKCNIKLYAVPVGAFSCLSASTPSASSRAAFGAERKHVSSAFTPIGYQRSDHMHYRTDCNTVAEFEVQLEELLNEVRTLTMSGRKSDAVELLQANYEAVKEQMESGAVGIEQAAVLDIVALGYLTVGDLKFVASVLDILNKVVDSLTDGEPFLDSVLLHMGSMYSTLKKFEKSISVYKRAIDIMEKKFGEDSSFLITPILGMAKVLGTIGRAGKAVECYNRAISLLESSRGFENEDLVIPLISLGNLMLKEGKGKDAETCFARIVNIYEKLYGEKNGKVGMAMYSLANAKCARGEADEAVTLCRRALEIIKDSNDIALDDSTIEKMRIDLAELLHVLGRANEGRELLEECLLINERLKGKEHPSSVKHLVNLAASYSRSKNYVEAERLLRIGLDIMIKAVGSDDQSITVPMLNLAVTLYNLKQDNDAEQLALEVLRIRENAFGKDSLPVGEALDCLVSIQSRLGKDESELLKLLKRILTIQEKEFGEDGKEVIDTLKKIVFCMDKLGMKDEKFLLQKRLSMLRMKFKNQMRY* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 198022 203299 + CsaV3_5G000430.1 Csa05g00043 528430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00043 561 Coils Coil 91 111 - -
Csa05g00043 561 Gene3D Tetratricopeptide repeat domain 353 560 IPR011990 GO:0005515
Csa05g00043 561 SUPERFAMILY TPR-like 355 494 IPR011990 GO:0005515
Csa05g00043 561 Coils Coil 196 216 - -
Csa05g00043 561 ProSiteProfiles TPR repeat profile. 183 216 IPR019734 GO:0005515
Csa05g00043 561 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 98 550 - -
Csa05g00043 561 SUPERFAMILY TPR-like 185 424 IPR011990 GO:0005515
Csa05g00043 561 Pfam Tetratricopeptide repeat 440 475 - -
Csa05g00043 561 SMART tpr_5 395 428 IPR019734 GO:0005515
Csa05g00043 561 SMART tpr_5 353 386 IPR019734 GO:0005515
Csa05g00043 561 SMART tpr_5 183 216 IPR019734 GO:0005515
Csa05g00043 561 SMART tpr_5 225 258 IPR019734 GO:0005515
Csa05g00043 561 SMART tpr_5 309 342 IPR019734 GO:0005515
Csa05g00043 561 SMART tpr_5 437 470 IPR019734 GO:0005515
Csa05g00043 561 SMART tpr_5 267 300 IPR019734 GO:0005515
Csa05g00043 561 Pfam Tetratricopeptide repeat 185 256 - -
Csa05g00043 561 Pfam Tetratricopeptide repeat 270 340 - -
Csa05g00043 561 Pfam Tetratricopeptide repeat 355 424 - -
Csa05g00043 561 Gene3D Tetratricopeptide repeat domain 183 352 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00043 - - - csv:101203336 1075.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01783 Csa-Chr3:13443465 Csa05g00043 Csa-Chr5:198022 9.47E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1027 . . . . . . . . . . Cma02g01123 . . . . Cpe05g00595 . . . . . . . . Cla01g00037 Cam01g0035 Cec01g0034 Cco01g0036 Clacu01g0038 Cmu01g0035 Cre09g2471 . . Cone14ag0004 . . Csa05g00043 Chy09g01443 . . . Bda06g00789 . . . . . . Cmo02g01152 . . . . . . . Bhi12g00649 . . Lac11g0164 Hepe06g0796 . Lcy12g0140 . . . . . . . Lsi09g00017 . . Cme09g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009135 1 6 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00043 Csa_Chr05 FPKM 14.978761 17.022936 0.162548 0.0 0.461882 0.232043 0.480076 1.324606 0.941561 1.222517