Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00046 ATGCCCTTCATCGAGGTAAACACCAGCTCCACCGCTGCAGAGGACGTCAAAATCAACTCTGCAATCAAAATTTTCTACAGAACTTACGGACGTGGCTCCACCAAGGTCCTTCTTATCATAGGATTGGCCGGAACCCACGATTCATGGGGCCCCCAAATCAAAGGGCTCACAGGGACCGATGTTCCCAATGACGACGGTGATCGGAATGCTGCCCATGTCGGCGAAGAACCCACCTTCGAGGATGGTGGTGGGATTGAGGTTTGTGCATTTGATAATCGGGGAATGGGTAGGAGCTCTGTCCCCACCAAAAAATCTGAATATACAACAAAGATAATGGCCAAGGATGCCATTGCCTTATTGGATCATTTGGGGTGGGAAAAGGCCCATATTTTTGGTCATTCCATGGGAGGTATGATAGCTTGCAAATTAGGAGCTATGGCGCCTGAAAGAGTCAAGTCGCTGGCCATGCTCAATGTAACCGGTGGAGGTTTTCAATGTTGCCCCAAGCTCGATAGGCAAACGTTTGACATTGCAGTCAGATTCATGAAGGCGAAGACTCCTGAACAAAGGGCCAGTGTCGATTTAGATACCCACTATTCAAAGGAATATCTTGAGGAGTATGTTGGATTTGAAAAAAGAAGAACATTATTGTATCGGGAATATGTTGAAGGTATATCAGCAACGGGAATGCAATCTAATGATGGTTTTGCGGGTCAAGTCAATGCATGCTGGACGCATCAAGTGACAAGAAAAGACATTGAATGCCTTCAGTCTGCTGGATTTCTTGTATCAGTCATTCATGGCAGGCACGATGTTATTGCTCAGATGTATTATGCTAGAAGACTTGCCGAAAAGCTGTATCCTGTTGCTAGAATGGTAGATCTCCATGGAGGTCATCTAGTCAGTCGAGAGAGAACCGAAGAGGTAAATCAAGCTCTTCTTGACTTAATCAAAGCCTCAGAAACAAAGATGAGTCCACATGATTGGACAAACTTGCCAAAGAAAAGCTCATGGTGGATGGAGGAGAGAATGGCTTTTGTAACAATGAAGACTGAAGGAGGAAGCAGTATCTCCTCCAAACCTTTCTTGTTAGAGAAACTCCATCTTTTCTTCTTGTATTTCTTTGGTCTGATTCTTTTGATTTTCGGGCATCTCCGGAACACCATCAAAAGTTTGAAACCCACCCGAGTTGGAGCCACCCTTACGTGA 1209 45.16 MPFIEVNTSSTAAEDVKINSAIKIFYRTYGRGSTKVLLIIGLAGTHDSWGPQIKGLTGTDVPNDDGDRNAAHVGEEPTFEDGGGIEVCAFDNRGMGRSSVPTKKSEYTTKIMAKDAIALLDHLGWEKAHIFGHSMGGMIACKLGAMAPERVKSLAMLNVTGGGFQCCPKLDRQTFDIAVRFMKAKTPEQRASVDLDTHYSKEYLEEYVGFEKRRTLLYREYVEGISATGMQSNDGFAGQVNACWTHQVTRKDIECLQSAGFLVSVIHGRHDVIAQMYYARRLAEKLYPVARMVDLHGGHLVSRERTEEVNQALLDLIKASETKMSPHDWTNLPKKSSWWMEERMAFVTMKTEGGSSISSKPFLLEKLHLFFLYFFGLILLIFGHLRNTIKSLKPTRVGATLT* 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 208526 212373 + CsaV3_5G000460.1 Csa05g00046 528433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00046 402 Gene3D alpha/beta hydrolase 5 318 IPR029058 -
Csa05g00046 402 PRINTS Epoxide hydrolase signature 84 99 IPR000639 GO:0003824
Csa05g00046 402 PRINTS Epoxide hydrolase signature 130 143 IPR000639 GO:0003824
Csa05g00046 402 PRINTS Epoxide hydrolase signature 144 157 IPR000639 GO:0003824
Csa05g00046 402 PRINTS Epoxide hydrolase signature 294 316 IPR000639 GO:0003824
Csa05g00046 402 PANTHER EPOXIDE HYDROLASE 5 399 - -
Csa05g00046 402 PRINTS Alpha/beta hydrolase fold signature 84 99 IPR000073 -
Csa05g00046 402 PRINTS Alpha/beta hydrolase fold signature 130 143 IPR000073 -
Csa05g00046 402 PRINTS Alpha/beta hydrolase fold signature 144 157 IPR000073 -
Csa05g00046 402 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 5 399 - -
Csa05g00046 402 SUPERFAMILY alpha/beta-Hydrolases 21 316 IPR029058 -
Csa05g00046 402 Pfam alpha/beta hydrolase fold 76 159 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00046 - - - csv:101203096 793.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00046 Csa-Chr5:208526 Csa04g00091 Csa-Chr4:501829 2.42E-10 dispersed
Csa05g00046 Csa-Chr5:208526 Csa03g01485 Csa-Chr3:11018413 9.86E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1029 . Blo15g00085 . . . Bpe07g01018 . . . . Cma02g01122 Cma15g01024 Car02g00931 Car15g00957 . Cpe05g00597 . . . . . . . . Cla01g00038 Cam01g0037 Cec01g0036 Cco01g0038 Clacu01g0039 Cmu01g0037 Cre09g2470 Cone1ag0993 . Cone14ag0005 Cone15ag0008 . Csa05g00046 Chy09g01442 . . . Bda06g00788 . . . . Bma12g01206 . Cmo02g01150 Cmo15g01087 . . . . . Cpe13g00318 Bhi12g00645 . . Lac11g0162 . . Lcy12g0138 . . . . . . . Lsi09g00018 . . Cme09g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002285 1 4 2 1 1 2 3 2 2 1 1 1 1 2 2 3 2 2 3 1 2 2 1 2 2 1 2 6 6 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00046 Csa_Chr05 FPKM 4.850708 5.535996 4.184073 4.871051 7.593514 7.860405 7.542443 3.665412 3.239614 3.343381