Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00048 ATGTTTCACCCAAACAATATGCAGCTGGCTATTCGGATACCGTCATCGCCTGCCCAAGATTCTCCACAGAATATGCAAGTTGATCAAAGTGACAAGTCTTTAGTCGTGAGGAATGATATGCAAAATGGGAGCTACCCACATGCCGAATACATCTTCAACTACTCCAAGAAACTTGAAGAGGATCTACACATGTTTGGAATGAAAATAAAGCAGCACGAGGACAACATTAAATTTCTTAAGACTCAGAAGAATAAATTAGATGAATCCATCCTCGACTTGCAAGTTATTCTAGGCAAGTATCATTCTTCTGGCACACCTGTGGGGGAAAACGAGGTTCATTCCCATTCTCCAAATGATGAGGAAACAAGGGAACAGATTATGCAACAGGAGAAATCTGCTGCTAGCATTATATGTAAATTGAACGCACATCATGGTATTCAAGCTTACAACCTCATGTTGACAAAGGACGTATTGGGTATTGTTGCTCGACTTGGAAGAGTTGATGATGATAATCTTAGCAGATTGCTCTCTGAGTACTTGGGAATGGAAACTATGCTGGCAATTGTCTGTAGAACATATGAGGGAGTGAAGGTGCTAGAAACATATGACAAGGAAGGTTTCATAAACAAAAGTCTTGGCCTTCATGGTCTTGGTGCTTCAATTGGAAGGAACTTGGATGGCCGGTTTCTCGTAATTTGTCTTGAACATTTGAGACCATATGCTGGTGACTTTATTGCCAATGACCCACAAAGGAGACTTGACCTTCTAAAGCCAAGATTACCTAACGGAGAGTGTCCACCTGGCTTTCTTGGCTTTGCTGTTAACATGATCAATATTGATAGCACACACTTGTTTTGTCTCGCAGCCAATGGATATGGTCTCAGGGAAACCCTGTTCTACTCTCTTTTTTCTCGTCTTCAAGTATATAAAACCAGAACAGACATGCTACAAGCTCTCCCTTGTATTAGCGATGGTGCACTTTCATTAGATGGAGGAATGATCAAGGCTACTGGTGTTTTTTGCTTGGGCAATCAGGAAGATGTTCAGTTGAGATTCCCAAAGCCCTCAATGAAATCAAGCCTACCTGAAAATTACATTGAATCCGAGAGGCAGATTAAAGAACTCAAGTGGAAAAAGGAAAAGATGGTTGAAGATATAAGGAGAGAACAAGCATTACTGGACAATACTAAGGGCAATTTTGACAGGAAAAAGGCGGAGTTTCTAAAGTTTCTGACTGAGAGCTCATCATACGCAGCGCAGCAACAACTCTCAGCCAAGCCAGAGAGGTTGACACCACGATGA 1302 41.63 MFHPNNMQLAIRIPSSPAQDSPQNMQVDQSDKSLVVRNDMQNGSYPHAEYIFNYSKKLEEDLHMFGMKIKQHEDNIKFLKTQKNKLDESILDLQVILGKYHSSGTPVGENEVHSHSPNDEETREQIMQQEKSAASIICKLNAHHGIQAYNLMLTKDVLGIVARLGRVDDDNLSRLLSEYLGMETMLAIVCRTYEGVKVLETYDKEGFINKSLGLHGLGASIGRNLDGRFLVICLEHLRPYAGDFIANDPQRRLDLLKPRLPNGECPPGFLGFAVNMINIDSTHLFCLAANGYGLRETLFYSLFSRLQVYKTRTDMLQALPCISDGALSLDGGMIKATGVFCLGNQEDVQLRFPKPSMKSSLPENYIESERQIKELKWKKEKMVEDIRREQALLDNTKGNFDRKKAEFLKFLTESSSYAAQQQLSAKPERLTPR* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 221495 225627 + CsaV3_5G000480.1 Csa05g00048 528435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00048 433 Coils Coil 69 89 - -
Csa05g00048 433 Coils Coil 365 392 - -
Csa05g00048 433 MobiDBLite consensus disorder prediction 104 123 - -
Csa05g00048 433 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 39 424 - -
Csa05g00048 433 PANTHER PROTEIN DEFECTIVE IN MERISTEM SILENCING 3 39 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00048 - - - csv:101202858 867.455
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g01983 Csa05g00048 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02340 Csa-Chr1:20556258 Csa05g00048 Csa-Chr5:221495 7.23E-172 dispersed
Csa03g01983 Csa-Chr3:15629144 Csa05g00048 Csa-Chr5:221495 2.03E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1039 . . . Bda07g01934 Bpe03g00190 . . . . . . . Car02g00928 . Sed01g3490 Cpe05g00599 . Bhi01g01492 Tan01g0092 Cmetu06g0095 Lac11g0158 Hepe07g0059 Mch10g0057 . Cla01g00042 Cam01g0040 Cec01g0039 Cco01g0041 Clacu01g0042 Cmu01g0040 Cre09g2467 . Cone5ag0690 . . . Csa05g00048 Chy09g01439 . . Blo09g00026 . . . . . . . Cmo02g01147 . Cma16g00044 . . . . Cpe13g00317 . . . . . . . . . . . . . . Lsi09g00021 Csa03g01983 Chy06g01198 Cme09g01985
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001858 1 3 1 0 1 2 3 2 2 3 2 2 1 2 2 2 2 2 3 2 3 2 2 2 2 2 2 11 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00048 Csa_Chr05 FPKM 22.035561 22.614998 19.116117 17.799744 21.930483 22.472803 20.950296 24.359859 24.114029 23.729187