Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00050 ATGTTCGGTGTAATGCAATCAGTTGACGAGGACAGTAAGCAAAAAAATTTGAAGCGTTCAAGGCCACTTTCAAACAACATGACCGTCACTAACTCTAGTGTTGCTCAGAGTTTGGATGACTCTTTCCTTTTCCCAGTTGAAGAGATTGTACAATATCCATTGCCAGGATATGTCGCACCCACTTCATTAACTTTTAGTCCAGATGATAGTTTTGTCACTTACTTATTTAGTCCTGATTGTTCTTTGAATAAGAAGGTTTTTGCTTTCGATATCAAAACTGGCAAACAGGAGTTGATTTTTAGTCCTCCTGATGGTGGACTGGATGAATGTAATATTTCTCCAGAAGAGAAACTGAGGAGAGAAAGATTGAGGGAACGCGGTTTAGGAGTAACTCGGTATGAATGGGTGAAAACAAGCACCAAAAGGAAAGCAATTATGGTGCCTCTGCCTGCTGGGATTTATATTCAGGATTTTTTTGGCTCAACCCCAGAGCTTAAGCTTTCCAGTAAACCCTCTTCACCAATCATGGATTCACATCTCTCACCAGATGGGTCCATGCTTGCATTTGTTAAAGATGGGGAATTACATGTAATGAATCTATCATATAATGAAGTGAGACAGTTGACTGTTGGTGCTAACACAAACATTTCGCATGGACTTGCAGAATATATAGCTGAGGAGGAAATGGATCGGAAAAATGGGTACTGGTGGTCGTTAGACAGCAAGTATATTGCATTTACACAAGTTGATACTTCAAAGATCCCTCCATTTAGAATCATGCATCAAGGTAAAAGCTCGGTTGGTTCAGATGCACAAGAAGACCATGCTTATTCATTTGCAGGAACTTCCAATGCTGTAGTTCGACTCGGTGTTGTCTCTGTTTCTGGAGGCCCTATTACTTGGATGGATCTTCTTTGTGGAGAAACAGGTGAGGAGGAATATCTGGCCCGAGTCTGTTGGATGCACGAAAATATTCTCATTGCTCAGATTCTGAATAGGTTACATACCAAGCTCAAAATACTCAGGTTTGATATTAAGACGGGGGAGAGAAAAGTTTTGCTGGTAGAAGAAGAAGATTCATGGATTAACTTACATGATTGTTTCACACCACTAGACAAAAGTATCAGCAAGTATTCTGGGGGATTTATATGGGCAAGTGAAAAAACTGGATTTAGACATCTTTATCTGCATGATGGCCATGGGACGTGCTTGGGGCCAATCACTGAAGGCGACTGGATGGTCGAACAGATTGCTGGTGTAAATGAGGCAACTGGGCTAGTTTATTTTACTGGAACTCTTGATGGGCCTCTTGAATCTCATCTTTACTGTGCCAAACTAACTACTGCCGGGAACACACCCTTGGATCCACCAATTAGACTGACTCATGGCAAGGGAAAACATGTCGTTGTACTCGATCATCGCATGGGAAGTTTTGTCGACATTCATGATTCACTTGATTCGCCCCCGAGGGTGTTGCTCTGTTCCTTGAAAGATGGAAGTGTCATTTTGCCAATTTATGAGCAAACACTTGCGATTCCAAGGATTGAAAGGCTTCATCTTGAGCCTCCAGAGATGGTTGAGGTACAGGCCTGTGATGGGACATTGCTTTATGGAGCTTTATACAAGCCTAGTGAGGCGATATTTGGACCGCCACCGTACAAAACTATGATCATTGTGTATGGAGGTCCAAGTGTACAACTAGTCTCCAATTCGTGGATCAATACGGTGGACATGAGAGCTCAGTATCTGCGTAGCAGAGGAATCTTAGTGTGGAAGTTAGACAACCGAGGAACCGCTCGACGTGGACTGAAATTTGAAGCTGCTCTGAAATACAATATCGGCTATATCGATGCAGACGATCAATTGGTTGGAGCAAAATGGCTGATCAGACAGGGTCTAGCAAGAGCTGGAGAGATTGGTTTATATGGATGGAGCTATGGTGGCTTTCTGTCAGCAATGAGCTTGGCTCGGTATCCAGATATCTTTCGATGTGCAGTATCGGGTGCCCCTGTTACTTCTTGGGATGGCTACGACACTTTCTATACAGAAAAGTACATGGGATTACCGACTCGAGATCCAGAAGTTTACAAGCGAAGCTCGGTGATTTACCATATAGAGAAGATGACTGGGAGTCTGCTGCTTGTTCATGGGATGATTGATGAGAACGTACACTTCAGGCATACAGCAAGACTTGTGAATGCACTCATATCTGCTAGAAAGAAGTATGAGCTACTGATATTCCCGGACGAACGACACATGCCTCGACAGCATCAAGATCGGATCTACATGGAAGAAAGAATCTGGGAATTCATTCAGAGGAACTTGTGA 2328 43.04 MFGVMQSVDEDSKQKNLKRSRPLSNNMTVTNSSVAQSLDDSFLFPVEEIVQYPLPGYVAPTSLTFSPDDSFVTYLFSPDCSLNKKVFAFDIKTGKQELIFSPPDGGLDECNISPEEKLRRERLRERGLGVTRYEWVKTSTKRKAIMVPLPAGIYIQDFFGSTPELKLSSKPSSPIMDSHLSPDGSMLAFVKDGELHVMNLSYNEVRQLTVGANTNISHGLAEYIAEEEMDRKNGYWWSLDSKYIAFTQVDTSKIPPFRIMHQGKSSVGSDAQEDHAYSFAGTSNAVVRLGVVSVSGGPITWMDLLCGETGEEEYLARVCWMHENILIAQILNRLHTKLKILRFDIKTGERKVLLVEEEDSWINLHDCFTPLDKSISKYSGGFIWASEKTGFRHLYLHDGHGTCLGPITEGDWMVEQIAGVNEATGLVYFTGTLDGPLESHLYCAKLTTAGNTPLDPPIRLTHGKGKHVVVLDHRMGSFVDIHDSLDSPPRVLLCSLKDGSVILPIYEQTLAIPRIERLHLEPPEMVEVQACDGTLLYGALYKPSEAIFGPPPYKTMIIVYGGPSVQLVSNSWINTVDMRAQYLRSRGILVWKLDNRGTARRGLKFEAALKYNIGYIDADDQLVGAKWLIRQGLARAGEIGLYGWSYGGFLSAMSLARYPDIFRCAVSGAPVTSWDGYDTFYTEKYMGLPTRDPEVYKRSSVIYHIEKMTGSLLLVHGMIDENVHFRHTARLVNALISARKKYELLIFPDERHMPRQHQDRIYMEERIWEFIQRNL* 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 229072 232419 + CsaV3_5G000500.1 Csa05g00050 528437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00050 775 PANTHER PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED 43 767 - -
Csa05g00050 775 Pfam Dipeptidyl peptidase IV (DPP IV) N-terminal region 148 489 IPR002469 GO:0006508
Csa05g00050 775 Gene3D alpha/beta hydrolase 518 774 IPR029058 -
Csa05g00050 775 Gene3D - 45 515 - -
Csa05g00050 775 SUPERFAMILY alpha/beta-Hydrolases 522 775 IPR029058 -
Csa05g00050 775 SUPERFAMILY DPP6 N-terminal domain-like 58 505 - -
Csa05g00050 775 PANTHER DIPEPTIDYL-PEPTIDASE 4-RELATED 43 767 - -
Csa05g00050 775 MobiDBLite consensus disorder prediction 1 28 - -
Csa05g00050 775 Pfam Prolyl oligopeptidase family 576 775 IPR001375 GO:0006508|GO:0008236
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00050 K01278 DPP4, CD26; dipeptidyl-peptidase 4 [EC:3.4.14.5] - csv:101223131 1552.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02381 Csa-Chr4:24153680 Csa05g00050 Csa-Chr5:229072 1.82E-10 dispersed
Csa04g02382 Csa-Chr4:24161959 Csa05g00050 Csa-Chr5:229072 1.44E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1044 Blo06g01060 . . . . . . . . . Cma02g01118 . Car02g00927 Car15g00959 . Cpe05g00600 . . . . . . . . Cla01g00044 Cam01g0041 Cec01g0040 Cco01g0042 Clacu01g0043 Cmu01g0041 Cre09g2466 . . Cone14ag0013 Cone15ag0015 . Csa05g00050 Chy09g01438 . . . . Bda15g00784 . Bpe12g00351 Bma08g00386 . . Cmo02g01146 Cmo15g01088 . . . . . Cpe13g00316 Bhi12g00638 . . . . . . . . . . . . . Lsi09g00022 . . Cme09g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002992 2 7 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 11 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00050 Csa_Chr05 FPKM 64.307747 72.058983 54.856415 54.632553 66.481079 70.369621 61.942898 55.69548 62.699951 55.854504