Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00051 ATGAATAACAATAACAGCTACAACAAGCTCCACACCTCCCACTCCGCCAACACCACTCCGGCAGCTTCCTTCCGCCTCTCCGGCAATGATCCCCCTCCACCCTCCTCCTCCCTCCGTCGTCGCTCTCGTATCCTAATCATCTCTTTCATGTCCGTTCTCCTTATTGCTGCTTCAGTCGTTTCCGCGGCTATCCTTGTTCGATCACATATGACATCTAGCCAACCCCATTTCCCTCACAACAAGCCTTCCCAAGCCATCTCCCGCGCGTGTAGCCACACGCTCTACCCATCTCTTTGCCTCTCCTCTCTTCTATCCTTCCCCGGCGCACAATCGGCCGACGTTCATGATCTTGTTCATATCTCTCTCAACTTAACTCTTCAGCATCTCACCAAAGCTCTTTACTCCACATCTCAAATCCCTGTCTTACAAATCTCTAAGGACCCTTTGGCTCATTCCGCTTATGAAGATTGTATGGAGCTTTTAAACGACGCCATTGATGCCTTTTCTCTCTCTCTTTTCTCTAAGGATGCTTCCAATCATGATATCATGACGTGGCTTAGTGCTGCATTGACTTACCACGACACGTGTACGGCTGGATTTCAAGATGTGGCTGACTTGGGTGTTAAGGATGAGGTGGAGGCCAAGTTGAGTGATTTGTCGGAGATGATTAGTAATTCTTTGGCCATATTTTCTGGGTTTGGTGGTGGGGATTTGCCAGTGGAGAATAGAAAGCGGCGGCGGTTGATGGAGAGTAGTACGACGTCGTGGGCGGCGGAGAATGGTGGTGATCATGAGGGGTTTCCTGCGTGGTTGAGTGGGAAGGATCGGCGGCTTTTGGCTGCTCCCCTATCGACGATTCAAGCGGATATTGTGGTTGCTAAGGATGGTTCTGGCAAATTCAAGACGGTGGCTGAGGCCATTGAGGCCGCTCCGTCGTCGAGTGGCCGCCGGATCATCATCTACATTAAGGCTGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTCGTGGGAGATGGGAAGGGCATAACTGTCATTTCAGGTGGCAAAAGTGTTTATGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCGGGTTCAGGAACAAACATAATTCTACGAGACATGACGTTTGAGAATACGGCAGGACCAAGTAAGCACCAAGCAGTGGCATTACGGTTGAGTGCAGACCACGCGGTGGTATACCATTGCAACATCATTGGATATCAAGACACTCTCTACGTGCACTCTAACCGTCAATTCTTCCGGGAGTGCGACATCTACGGAACAATAGACTTCATCTTCGGCAACGCTGTAGTGGTTTTCCAAAGTTGCAACATCTACGCTCGAAAGCCAATGGCAGGACAAAAAAACACGATAACAGCACAAGACCGAAAGGACCCGAACCAAAACACAGGAATCTCAATCCACGCTTGCAAGATCGTAGCCACCGGCGACCTTGAAGCGTCCAAGGGTTCTTTCCCCACATTTCTAGGTCGACCTTGGAAACTATACTCTCGAGTGGTGTACATGGTGTCTTCCATGGGAGACCATATCCATCCACGTGGGTGGCTTGAGTGGCAAGGCTCTTTTGCTCTTGACACTCTTTATTACGGTGAGTATATGAATTCCGGGCCGGGGGCCGCCGTGGGGCAGCGGGTCAAGTGGCCGGGTTACCGAGTCATTACTTCCACGGTGGAAGCCTCCAAGTTTACCGTCGGCCAATTTATTTACGGTTCTTCTTGGTTGCCTTCTACCGGAGTCTCCTTTTCTGCTGGATTATCTACTAACTAA 1815 49.92 MNNNNSYNKLHTSHSANTTPAASFRLSGNDPPPPSSSLRRRSRILIISFMSVLLIAASVVSAAILVRSHMTSSQPHFPHNKPSQAISRACSHTLYPSLCLSSLLSFPGAQSADVHDLVHISLNLTLQHLTKALYSTSQIPVLQISKDPLAHSAYEDCMELLNDAIDAFSLSLFSKDASNHDIMTWLSAALTYHDTCTAGFQDVADLGVKDEVEAKLSDLSEMISNSLAIFSGFGGGDLPVENRKRRRLMESSTTSWAAENGGDHEGFPAWLSGKDRRLLAAPLSTIQADIVVAKDGSGKFKTVAEAIEAAPSSSGRRIIIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSVYDKVTTFRTATFAGSGTNIILRDMTFENTAGPSKHQAVALRLSADHAVVYHCNIIGYQDTLYVHSNRQFFRECDIYGTIDFIFGNAVVVFQSCNIYARKPMAGQKNTITAQDRKDPNQNTGISIHACKIVATGDLEASKGSFPTFLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEASKFTVGQFIYGSSWLPSTGVSFSAGLSTN* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 235332 240442 - CsaV3_5G000510.1 Csa05g00051 528438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00051 604 Pfam Pectinesterase 289 586 IPR000070 GO:0030599|GO:0042545
Csa05g00051 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 83 233 IPR035513 -
Csa05g00051 604 CDD PMEI-like_3 89 235 - -
Csa05g00051 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 84 231 IPR035513 -
Csa05g00051 604 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 231 IPR006501 GO:0004857
Csa05g00051 604 MobiDBLite consensus disorder prediction 1 38 - -
Csa05g00051 604 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
Csa05g00051 604 SMART PMEI_2 81 229 IPR006501 GO:0004857
Csa05g00051 604 MobiDBLite consensus disorder prediction 1 36 - -
Csa05g00051 604 Gene3D - 283 601 IPR012334 -
Csa05g00051 604 PANTHER PECTINESTERASE 37 601 - -
Csa05g00051 604 Pfam Plant invertase/pectin methylesterase inhibitor 85 229 IPR006501 GO:0004857
Csa05g00051 604 SUPERFAMILY Pectin lyase-like 284 600 IPR011050 -
Csa05g00051 604 PANTHER PECTINESTERASE 37 601 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01994 Csa05g00051 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00051 Csa-Chr5:235332 Csa07g01869 Csa-Chr7:18705097 3.57E-175 dispersed
Csa03g01994 Csa-Chr3:15703537 Csa05g00051 Csa-Chr5:235332 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00051 - - csv:101216816 1166.76