Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00059 ATGACCTATCTCCAGGAGAAGATTGTGAGGTTTCAGGACTGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCTGCAGATAACACTTTAAATGCTGGAAAGATTGGGACAAGAACTGACTTAGTTTCAGAGAAGCCTCATAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATTAAGAAATCCTTGAAGTCATCTTCTTTCAATAAATTTATGTCCAAAGGTTTTGGAACTGGTCAAAAGGTGCTTGACCCACAGGGACCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCATGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTTCCTGTGATTGATGACGATAAGAAGTGTCTTGGGTTAGATAATAAGATGGAGATTACGGCTAGTGTGTTACGTTCATTCACCGACATATTCTATATATTACATATTGTTTTCCAATTTCGTACGGGATTTATTGCTCCTTCTTCTCGGGTGTTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGAAATAGCAAAGAGATATCTTTCATCATACTTTTTGATTGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATCATTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACCAAGGACTTGCTGAAATTTGTTGTTTTCTTCCAGTATGTGCCACGGTTTATTAGAATCTATCCATTATATAAAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGTTGGCAAGTCATGTCTTTGGAGCATTCTGGTACTTGTTTTCTATAGAACGAGAAACTACATGCTGGCAGAGGGCTTGTCATAAGACTGGCTGTGTTTCTAATTCACTATATTGTGATGCTGATGTCATTCAAAGAAACAACGCATTTTTAAATGTTTCATGCTCTCTAGTTGAAGACAATCCTCCTTTTGATTTTGGAATATTTCTTGATGCTCTTAAATCTGGTGTCGTGGGGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCACATACGTGTGGGAAATTTGCTTTGCTGTTTTCATCTCCATTTCTGGCTTGGTTCTGTTTTCATTTCTTATCGGGAACATGCAGACATATTTGCAATCCACCACTACAAGGTTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTGCTCCCTGAAAGTCTCCGAGAGCGAATCAGGAGGTATGAGCAATATAAGTGGCAGGAAACCAGAGGTGTTGATGAAGAGAATCTGGTTCGAAATCTTCCAAAAGATCTTAGAAGGGATATTAAACGCCATCTCTGCTTGTCTTTGCTAATGAGGGTACCCATATTTGAAAAAATGGACGAACAATTGTTGGATGCGATGTGTGACCGTCTCAAGCCAGTACTATATACAGAGGAAAGCTACATTGTTAGGGAAGGAGATCCGGTAGACGAGATGATTTTCATTATGCGAGGCAAGTTATTGTCTGTAACTACGAATGGGGGTAGAACCGGTTTCTTTAATTCTGAACATCTTAAGGCGGGTGATTTCTGTGGTGAAGAGTTACTGACGTGGGCTCTGGATCCACACTCCTCATCTAACCTGCCAATTTCAACAAGAACTGTTCGAACACTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCTGATGACTTGAAGTTTGTAGCCTCACAGTTCCGAAGACTTCACAGCAAGCAGCTGCGACACACTTTCAGGCTTTATTCGCAGCAATGGAGGACATGGGCAGCATGTTTTATACAGGCAGCATGGCGCCGATACCGCAGAAAGAAGCATGAACAGACTCTCTTGGAAGAAGAAAACAGGTTAAAAGATGCATTGGCCAAGACAGGTGGGAGTTCTCCTAGTTTAGGTGCCACCATCTATGCATCTAGATTTGCAGCTAACATCCTTAGAACGATTCGACGGACAAGCTCTCGGAAGGCCAGGATTCCAGAGAGAATACCACCATTGTTGCTTCAGAAACCAGCAGAACCAGATTTTACTTCTGAAGAGAATAGTTTATAG 2142 41.04 MTYLQEKIVRFQDWSSDKTSRGLYSADNTLNAGKIGTRTDLVSEKPHKELETGSYRINRIKKSLKSSSFNKFMSKGFGTGQKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDDKKCLGLDNKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWEIAKRYLSSYFLIDILAVLPLPQVVILIIIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQRACHKTGCVSNSLYCDADVIQRNNAFLNVSCSLVEDNPPFDFGIFLDALKSGVVGSMNFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRLYSQQWRTWAACFIQAAWRRYRRKKHEQTLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPLLLQKPAEPDFTSEENSL* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 292711 299596 - CsaV3_5G000590.1 Csa05g00059 528446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00059 713 SMART cnmp_10 482 613 IPR000595 -
Csa05g00059 713 Pfam Ion transport protein 94 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa05g00059 713 Gene3D Helix hairpin bin 408 473 - -
Csa05g00059 713 ProSiteProfiles cAMP/cGMP binding motif profile. 482 566 IPR000595 -
Csa05g00059 713 SUPERFAMILY cAMP-binding domain-like 411 604 IPR018490 -
Csa05g00059 713 Pfam Cyclic nucleotide-binding domain 502 593 IPR000595 -
Csa05g00059 713 Gene3D Jelly Rolls 480 600 IPR014710 -
Csa05g00059 713 Coils Coil 634 654 - -
Csa05g00059 713 Gene3D - 96 406 - -
Csa05g00059 713 CDD CAP_ED 482 613 IPR000595 -
Csa05g00059 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 709 - -
Csa05g00059 713 SUPERFAMILY Voltage-gated potassium channels 85 404 - -
Csa05g00059 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 709 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02595 Csa-Chr3:24479290 Csa05g00059 Csa-Chr5:292711 4.53E-22 dispersed
Csa03g02598 Csa-Chr3:24492781 Csa05g00059 Csa-Chr5:292711 6.90E-113 dispersed
Csa03g02599 Csa-Chr3:24499080 Csa05g00059 Csa-Chr5:292711 2.47E-54 dispersed
Csa03g02600 Csa-Chr3:24506843 Csa05g00059 Csa-Chr5:292711 0 dispersed
Csa03g02601 Csa-Chr3:24517975 Csa05g00059 Csa-Chr5:292711 1.10E-155 dispersed
Csa03g02602 Csa-Chr3:24529455 Csa05g00059 Csa-Chr5:292711 0 dispersed
Csa05g00059 Csa-Chr5:292711 Csa06g01202 Csa-Chr6:10197240 0 dispersed
Csa01g00504 Csa-Chr1:3351942 Csa05g00059 Csa-Chr5:292711 1.01E-144 transposed
Csa02g00546 Csa-Chr2:3839081 Csa05g00059 Csa-Chr5:292711 0 transposed
Csa03g03885 Csa-Chr3:34127090 Csa05g00059 Csa-Chr5:292711 0 transposed
Csa05g03020 Csa-Chr5:30422601 Csa05g00059 Csa-Chr5:292711 2.35E-130 transposed
Csa03g00811 Csa-Chr3:6975043 Csa05g00059 Csa-Chr5:292711 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00059 K05391 - csv:101221781 1410.97