Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00067 ATGAGTAAGATTTTCAGGGCGTCATCATCTTTGGGAACATGGAAGCACAATCGGTGGAAAGCTTGCTTGGAACTATTCTCGACTCTATGTGAAGGTTTACACACTGAAAACTCCAACATTATTTCTACCAATATTTATATAAGTCGTCATGTAAGAGATGGTCATCTTGATCTTGCTCAAACTCTGTTCAATGAAATGCCAGTAAGAAGTGTTGTCTCATGGAATATCATGATTTCTGGATACTCCAAATTTGGAAAGTATAGTGAAGCTCTCAATCTGGCTTCAGAGATGCATTGCAACAATGTAAAATTAAATGAGACGACATTTTCTAGTTTGTTGAGTATTTGTGCTCATTCAGGGTGTTCATCTGAGGGAAAACAATTTCATTGTTTGGTTTTGAAATCTGGGTTGCAGATATTTGAGCGTGTTGGAAGTGCATTAGTGTATTTCTATGCAAATATCAATGACATTAGTGGAGCCAAGCAAGTCTTTGATGAGCTGCATGATAAAAATGATTTATTATGGGACTTGCTGCTTGTAGGGTATGTGAAATGTAACTTAATGGATGATGCTTTAGATCTATTTATGAAAATTCCAACTCGGGATGTGGTGGCATGGACTACTATGATATCAGCGTATGCAAGAAGTGAGCATAACTGTAAGAGGGGATTGGAATTATTCTGCTCCATGCGGATGAATGGTGAGGTTGAACCTAATGAGTTCACTTTTGATTCTGTTGTAAGAGCTTGTGGGAGAATGAGATATTTGAGTTGGGGGAAGGTTGTTCATGGGATTTTGACTAAATACGGATTCCACTTCGATCATTCTGTTTGTAGTGCACTGATTTTATTTTATTGTCAGTGTGAAGCTATTGACAATGCCAAGGCAGTTTATGATAGTATGGAAAGACCGTGTCTAAAGGCTTCAAATTCTCTTCTAGAGGGGTTAATATTTGCAGGAAGAATTAATGATGCTGAAGAAATTTTTTGTAAGTTAAGAGAAAAAAATCCGGTTTCATATAATTTGATGCTTAAAGGGTATGCAACGAGTGGTAGAATTGAAGGATCAAAAAGATTATTTGAAAGAATGACTCATAAAACTACCAGTTCATTGAACACTATGATATCTGTGTATTCTAGGAATGGTGAAATTGATAAAGCTTTCAAATTATTTGAGTCAGTGAAGAGTGAAGGAGATCCTGTGACATGGAACTCAATGATATCAGGTTGTATTCAAAATCATCAGCATGAAGGGGCGTTGAAACTCTATATAACCATGTGCAGAACATCAGTTGAACGCTCTAGATCAACATTCTCTGCTCTGTTTCAAGCATGCACATGCTTAGAATATATTCAATTGGGTCAAGCACTACATGTGCATGCAATCAGGGAAGCCTTTGACTCGAATGTTTATGTTGGAACATCTCTCATAGATATGTACGCAAAATGTGGGAGCATCTATGATGCTCAAACTTCGTTTGCCAGTGTTTGTTTCCCTAATGTGGCAGCTTTTACCGCTCTAATTAATGGATATGTGCATCATGGACTTGGGATTGAAGCATTCTCAGTCTTTGACGAGATGTTAAAACACAAAGTTCCGCCAAATGGAGCTACTCTTTTGGGGATTCTTTCTGCATGTAGTTGTGCGGGTATGGTAAAGGAAGGAATGACAGTTTTCCATTCAATGGAAAAATGTTATGGTGTGATTCCAACCCTAGAACACTACGCGTGTGTGGTGGATCTTCTTGGTCGTTCGGGACGTCTGTATGAAGCTGAAGCATTTATTAGATGCATGCCGATTGAAGCTGATAGAGTTATTTGGGGAGCTCTGCTGAATGCTTGTTGGTTTTGGATGGACTTGGAATTGGGTGAGAGTGTGGCTAAGAAGGTGCTTAGTTTGGACCCCAAAGCAATATCTGCTTATATTATTCTGTCTAATATATATGCTAAATTAGGGAAGTGGGTAGAGAAGATCAATGTGAGGAGGCAATTGATGAGCTTAAAAGTGAAAAAGATTCGTGGTTGTAGCTGGATCGATGTAAATAATAAAACTTGCGTTTTCTCTGCAGGAGACAGGTCTCATCCTAACTGTAATGCAATTTATTCAACTTTAGAGCATCTATTAGCAAATGTAACTCCATAG 2142 38.19 MSKIFRASSSLGTWKHNRWKACLELFSTLCEGLHTENSNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDNAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCFPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLELGESVAKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRQLMSLKVKKIRGCSWIDVNNKTCVFSAGDRSHPNCNAIYSTLEHLLANVTP* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 344648 348011 + CsaV3_5G000670.1 Csa05g00067 528454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00067 713 Gene3D Tetratricopeptide repeat domain 131 258 IPR011990 GO:0005515
Csa05g00067 713 Gene3D Tetratricopeptide repeat domain 11 130 IPR011990 GO:0005515
Csa05g00067 713 Gene3D Tetratricopeptide repeat domain 259 363 IPR011990 GO:0005515
Csa05g00067 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Csa05g00067 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Csa05g00067 713 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 123 319 - -
Csa05g00067 713 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 199 691 - -
Csa05g00067 713 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 128 - -
Csa05g00067 713 Gene3D Tetratricopeptide repeat domain 475 704 IPR011990 GO:0005515
Csa05g00067 713 Pfam PPR repeat family 400 445 IPR002885 -
Csa05g00067 713 Pfam PPR repeat family 499 546 IPR002885 -
Csa05g00067 713 Pfam PPR repeat family 70 117 IPR002885 -
Csa05g00067 713 Pfam PPR repeat family 201 250 IPR002885 -
Csa05g00067 713 Gene3D Tetratricopeptide repeat domain 364 453 IPR011990 GO:0005515
Csa05g00067 713 Pfam PPR repeat 43 69 IPR002885 -
Csa05g00067 713 Pfam PPR repeat 370 398 IPR002885 -
Csa05g00067 713 Pfam PPR repeat 310 336 IPR002885 -
Csa05g00067 713 Pfam PPR repeat 338 364 IPR002885 -
Csa05g00067 713 Pfam E motif 619 679 IPR046848 -
Csa05g00067 713 TIGRFAM PPR: pentatricopeptide repeat domain 370 398 IPR002885 -
Csa05g00067 713 TIGRFAM PPR: pentatricopeptide repeat domain 503 535 IPR002885 -
Csa05g00067 713 TIGRFAM PPR: pentatricopeptide repeat domain 72 106 IPR002885 -
Csa05g00067 713 TIGRFAM PPR: pentatricopeptide repeat domain 542 571 IPR002885 -
Csa05g00067 713 TIGRFAM PPR: pentatricopeptide repeat domain 338 364 IPR002885 -
Csa05g00067 713 TIGRFAM PPR: pentatricopeptide repeat domain 401 432 IPR002885 -
Csa05g00067 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Csa05g00067 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Csa05g00067 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 237 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00067 - - - csv:101215850 1444.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00067 Csa-Chr5:344648 Csa04g01887 Csa-Chr4:18642995 5.12E-31 dispersed
Csa05g00067 Csa-Chr5:344648 Csa03g01691 Csa-Chr3:12669403 4.29E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00067 Csa_Chr05 FPKM 9.49138 9.978695 12.316379 12.916383 4.114312 5.63971 4.664946 19.527027 22.707832 24.016129