Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00072 ATGGCGTCCAAGCGGATCTTGAAGGAACTCAAGGATCTGCAGAGGGATCCTCCTACGTCTTGCAGTGCTGGTCCTGTAGCTGAAGACATGTTTCACTGGCAAGCAACCATAATGGGACCACCAGACAGTCCCTATGCTGGTGGTGTCTTCCTTGTCACCATTCACTTCCCTCCAGACTACCCATTTAAGCCTCCCAAGGTAGCGTTCAGAACAAAGGTATTCCACCCAAATATAAACAGCAATGGAAGCATTTGCCTGGACATATTGAAAGAGCAATGGAGCCCTGCCCTAACCATTTCTAAGGTGTTGCTTTCAATCTGTTCTTTGTTAACGGATCCTAATCCTGACGATCCATTGGTGCCGGAGATTGCTCACATGTACAAGACAGACAGGAACAAGTATGAAACTACTGCTAGGAGCTGGACCCAGAAGTACGCCATGGGGTAA 447 48.1 MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG* 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 368803 372357 - CsaV3_5G000720.1 Csa05g00072 528459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00072 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Csa05g00072 148 SMART ubc_7 4 147 - -
Csa05g00072 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Csa05g00072 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Csa05g00072 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Csa05g00072 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Csa05g00072 148 CDD UBCc 3 142 IPR000608 -
Csa05g00072 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
Csa05g00072 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00072 - - K06689 csv:101220694 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01703 Csa-Chr4:16420288 Csa05g00072 Csa-Chr5:368803 7.48E-106 dispersed
Csa05g00072 Csa-Chr5:368803 Csa06g01122 Csa-Chr6:9320179 8.99E-107 dispersed
Csa03g02182 Csa-Chr3:18947625 Csa05g00072 Csa-Chr5:368803 4.05E-110 transposed
Csa01g02391 Csa-Chr1:21187658 Csa05g00072 Csa-Chr5:368803 7.43E-31 transposed
Csa02g02281 Csa-Chr2:20392773 Csa05g00072 Csa-Chr5:368803 4.02E-35 transposed
Csa03g00839 Csa-Chr3:7129457 Csa05g00072 Csa-Chr5:368803 1.79E-40 wgd
Csa05g00072 Csa-Chr5:368803 Csa05g00222 Csa-Chr5:1325359 5.02E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g857 Blo06g01071 Blo15g00101 Bda05g00107 . Bpe03g00169 . Bma10g01274 Bma14g01988 . Cmo18g01322 . . . . Sed01g3831 . . Bhi01g01436 Tan01g0162 Cmetu06g1241 . . Mch10g0101 . Cla01g00205 . . . . . . . . . . Lsi05g01167 Csa05g00072 . . . . . Bda15g00771 . Bpe12g00368 . . . . . . Cma18g01293 . . . . Bhi12g00607 . . . Hepe06g0766 . . Cla05g00940 Cam05g1029 Cec05g1032 Cco05g1028 Clacu05g1018 Cmu05g0971 Cre05g1050 . . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00072 Csa_Chr05 FPKM 14.308086 15.782413 14.418781 14.250699 20.48037 19.827694 19.784943 12.040396 10.356232 9.755033