Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00074 ATGAGCTTCAAAAGGGATCTGGAGCTTGTCGTCTTCGTTTTCTGTGCAGTTTTCTGGTATGCAGCGACTTTTTCTCCGGTCATGTCAGAGCCGATCAAAGACAAGGAAGCTTTGCTTAATTTTATTAGTAAGATGGATCACTCACACGCGATCAATTGGAAAAAGAGCACTTCTTTGTGCAAAGAGTGGATTGGAGTTCAATGCAACAATGATGAATCTCAAGTTGTAGGTTTGCGATTGGCTGAAATTGGCTTACATGGTTCGATCCCAGTGAACACTCTTGGCCGACTATCGGGACTTGAAACTCTAAGCCTAGGATCAAACTACATATCAGGGTCTTTCCCTTCTGACTTCCAAGAACTGAGAAATCTCAACTCACTCTACTTGGAAAACAACGGGTTTTCTGGTCCATTGCCGTTGGATTTCTCAGTATGGAAGAATCTCAGCATCATTGATTTGTCCAACAATGCCTTCAATGGGAGCATCCCTCGCTCGATATCAAACATGACACATCTAACAACATTAAACCTCGCCAATAACTCACTCTCCGGTGAGATTCCAGACCTCCACCTACCTAGTTTGCAGGACTTGGATCTTTCGAACAACTTCCTCACAGGAAATGTCCCTCAGTCCCTTCAAAGATTTCCAAGTCGGGCATTCTCCGGTAACAACCTTGTCCCCAAGATTAAGAATGCTGTTCCTCCAATTCGTCCTGGACAGTCGCCCAATGCAAAGCCATCAAAGAAAGGTACAACAACAATTGGTGAAGCAGCAATTTTAGGCATTATAATTGGAGGTTCTGCAATGGGGTTAGTTATAGCAGTCACTTTGATGGTTATGTGCTGCTCAAACAGAAGAGTGAAAAACAATGCCTCATCAAAGCTGGACAAACAAGATTTGTTTGTAAAGAAAAAGGGATCTGAGACACAAAGCAACAGCCTCAAGTTTTTTCGGAGTCAGAGCCTTGAGTTTGACTTGGAGGACTTGTTGAGGGCGTCTTCTGAGGTGCTCGGGAAGGGGACGTCTGGGACGACGTATAAGGCAACATTAGAAGACGGAAATGCTGTGGCAGTGAAGAGGTTGAAGGAAGTGAGTGTTTCAAAGAAAGAATTTGAGCAGCAGATGGAAGTGGTAGGAAGCATTGAACATGAAAATGTGTGTGGTTTAAGGGCATATTACTATTCAAAGGATGAGAAACTCATGGTCTTCGACTTTTACCAACGTGGAAGTGTCTCCGCAATGTTGCATGTTGCAAGAGAGAAAGGGCAGTCTCCACTTGACTGGGAAACTCGACTCCGAATCGCCATTGGTGCCGCCAGAGGAATCGCTCGCATCCATTCACAAAACTGCGGCAAACTTCTTGTCCATGGAAACATCAAGGCATCAAACGTATTCCTTAACTCCCACGGCTACGGTTGCGTCACCGACGCCGGTGTCGCTGCTCTCATGAACCTCATGGCCCCACCAGCCACCAGATCAGCCGGATACCGTGCTCCCGAACTCAAGGACTCCCGCAAAGCATCTCAAGCCTCTGATACTTACAGCTTCGGCGTCGTGCTTCTCGAGCTCCTCACCGGAAAATTTCCACTGCATACAAAGGGAGGTAACGGTGGAGATCAGATAATCCACCTGGTGCGGTGGGTGAACGCGGTGGTCCGAGAGGAGTGGACGGCGGAGGTGTTCGACGTGGAGCTTTTGAGGTATCCGAACATAGAGGAGGAGATGTTAGAGACGTTGCAAATTGCGTTATCTTGTGTAGGAAGAGTTCCGGATGATCGGCCGGCAATGGCGGATGTTGCGGCTCGTTTGGAGGGAGTTCGCCGGGTGAGCGGCGTAGGAAGCTTACCACCGGTGCTGCCGCCGGCGTTGGAACGCGGAGCGGAGGAGTTGATCCAGATTCAAGTGAACGTTGGTGAGGGTGACGGTGGAGCTCCGTCGAGATCGAATTGA 1950 48.21 MSFKRDLELVVFVFCAVFWYAATFSPVMSEPIKDKEALLNFISKMDHSHAINWKKSTSLCKEWIGVQCNNDESQVVGLRLAEIGLHGSIPVNTLGRLSGLETLSLGSNYISGSFPSDFQELRNLNSLYLENNGFSGPLPLDFSVWKNLSIIDLSNNAFNGSIPRSISNMTHLTTLNLANNSLSGEIPDLHLPSLQDLDLSNNFLTGNVPQSLQRFPSRAFSGNNLVPKIKNAVPPIRPGQSPNAKPSKKGTTTIGEAAILGIIIGGSAMGLVIAVTLMVMCCSNRRVKNNASSKLDKQDLFVKKKGSETQSNSLKFFRSQSLEFDLEDLLRASSEVLGKGTSGTTYKATLEDGNAVAVKRLKEVSVSKKEFEQQMEVVGSIEHENVCGLRAYYYSKDEKLMVFDFYQRGSVSAMLHVAREKGQSPLDWETRLRIAIGAARGIARIHSQNCGKLLVHGNIKASNVFLNSHGYGCVTDAGVAALMNLMAPPATRSAGYRAPELKDSRKASQASDTYSFGVVLLELLTGKFPLHTKGGNGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPAMADVAARLEGVRRVSGVGSLPPVLPPALERGAEELIQIQVNVGEGDGGAPSRSN* 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 375984 378213 - CsaV3_5G000740.1 Csa05g00074 528461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00074 649 SUPERFAMILY Protein kinase-like (PK-like) 335 621 IPR011009 -
Csa05g00074 649 Pfam Leucine rich repeat 88 133 IPR001611 GO:0005515
Csa05g00074 649 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Csa05g00074 649 ProSiteProfiles Protein kinase domain profile. 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00074 649 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Csa05g00074 649 Pfam Leucine Rich Repeat 193 214 IPR001611 GO:0005515
Csa05g00074 649 Gene3D Transferase(Phosphotransferase) domain 1 407 611 - -
Csa05g00074 649 Gene3D Phosphorylase Kinase; domain 1 297 405 - -
Csa05g00074 649 Pfam Protein kinase domain 334 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00074 649 PANTHER OS05G0588300 PROTEIN 22 609 - -
Csa05g00074 649 SUPERFAMILY L domain-like 48 215 - -
Csa05g00074 649 ProSiteProfiles Leucine-rich repeat profile. 171 192 IPR001611 GO:0005515
Csa05g00074 649 Gene3D Ribonuclease Inhibitor 32 236 IPR032675 -
Csa05g00074 649 PANTHER LRR RECEPTOR-LIKE KINASE 22 609 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02181 Csa-Chr3:18942917 Csa05g00074 Csa-Chr5:375984 0 dispersed
Csa05g00074 Csa-Chr5:375984 Csa06g01121 Csa-Chr6:9313912 3.12E-173 dispersed
Csa07g00952 Csa-Chr7:8359681 Csa05g00074 Csa-Chr5:375984 2.72E-70 transposed
Csa05g00074 Csa-Chr5:375984 Csa05g00223 Csa-Chr5:1334228 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78207 PF00069 Pkinase 5.20E-31 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00074 - - csv:101219980 1243.02