Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00080 ATGGAGCAAGACAACGAAGAGGTGAAGACGTTTCAGAGCTTAGGAATCTGTGAGCAATTGGTTGAGGCATGTGACAGTTTAGGCTGGAAAAATCCATCAAAGATTCAGGCGGAGGCTATTCCTCATGCCCTAGAAGGAAAGGATTTAATTGGACTTGCACAAACTGGTTCTGGGAAAACTGGAGCTTTTGCTCTGCCCATTTTGCAAGCCCTATTGGAAGCTCCCCAAGCATTTTTTGCCTGTGTTCTCTCTCCCACAAGGGAGCTTGCAATTCAGATAGCTGAGCAGTTTGAAGCTTTAGGGTCTGGCATCGGTATTAAGTGTGCAGTGCTCGTCGGAGGGGTAGACATGGTGCAGCAAGCCATTAACCTGGCGAAACGGCCACATGTTGTTGTTGGGACACCTGGACGCCTTGTGGACCATCTAACCAATACAAAGGGGTTTTCCCTGCGCACATTGAAATATCTCGTCCTTGATGAGGCAGATAGGTTATTGAATGAAGACTTCGAAAAGTCAATAGATGAAATTTTGAATGAAATTCCTCGTGAGAGGAGAACATATCTATTTTCTGCTACTATGACCAAAAAGGTTCGGAAACTTCAAAGAGCATGCTTAAGGAACCCTGTTAAGATTGAGGCAGCCACCAAATATTCCACTGTCGACACATTGAAGCAGCAATATTGTTTTATCCCTGCGAAGTATAAGGAGTGTTATCTTGTCTATATCTTGACTGAGATGTCTGGTTCAACCTCAATGGTCTTCACTCGCACTTGTGATGCCACTCGCCTCCTGTCATTGATTCTTCGAAATCTTGGATTGAGAGCCATACCCATAAGTGGTCAGATGACCCAGGCGAAGCGACTGGGAGCCTTAAATAAGTTCAAGGCTGGAGAGTGCAATATTCTTATTTGCACTGATGTGGCTAGCAGAGGACTTGATATTCCATCTGTGGATATGGTCATAAATTATGATATTCCTTCAAATTCCAAGGATTACATACATAGAGTTGGAAGAACTGCTCGTGCAGGTCGTTCTGGGGTTGCTATTTCGTTGGTTAATCAGTATGAGTTAGAGTGGTATATACAAATAGAGAAGCTCATAGGGAAAAAACTGCCACAGTTTTCCGCCCAAGAAGAGGAAGTTTTGATGCTGTTAGAGCGTGTGGCAGAGGCAAAGAGAATATCTCTCATGAAAATTAAAGAAACTGGTGGTAGAAAGAGGAGGCGAGGTGGAGATGACGACGATGACAACGAGAATAATGATGTTGAGAAGTATCTGCGCCTCAAGACTGGAAAGGGTGGGAAAATGTCCAAGAATGGTAAAACATCAAAGAAGATGAAAAGAAGATGA 1350 43.7 MEQDNEEVKTFQSLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEAPQAFFACVLSPTRELAIQIAEQFEALGSGIGIKCAVLVGGVDMVQQAINLAKRPHVVVGTPGRLVDHLTNTKGFSLRTLKYLVLDEADRLLNEDFEKSIDEILNEIPRERRTYLFSATMTKKVRKLQRACLRNPVKIEAATKYSTVDTLKQQYCFIPAKYKECYLVYILTEMSGSTSMVFTRTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEVLMLLERVAEAKRISLMKIKETGGRKRRRGGDDDDDNENNDVEKYLRLKTGKGGKMSKNGKTSKKMKRR* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 395605 402070 + CsaV3_5G000800.1 Csa05g00080 528467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00080 449 SMART ultradead3 28 226 IPR014001 -
Csa05g00080 449 PANTHER RNA HELICASE 3 421 - -
Csa05g00080 449 Gene3D - 1 214 IPR027417 -
Csa05g00080 449 MobiDBLite consensus disorder prediction 403 449 - -
Csa05g00080 449 Pfam DEAD/DEAH box helicase 34 200 IPR011545 GO:0003676|GO:0005524
Csa05g00080 449 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 157 165 IPR000629 -
Csa05g00080 449 PANTHER BNAC02G41920D PROTEIN 3 421 - -
Csa05g00080 449 SMART helicmild6 262 343 IPR001650 -
Csa05g00080 449 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 211 IPR014001 -
Csa05g00080 449 MobiDBLite consensus disorder prediction 403 430 - -
Csa05g00080 449 CDD DEADc_DDX47 10 212 IPR044765 GO:0005524
Csa05g00080 449 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 238 382 IPR001650 -
Csa05g00080 449 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Csa05g00080 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 364 IPR027417 -
Csa05g00080 449 Pfam Helicase conserved C-terminal domain 238 343 IPR001650 -
Csa05g00080 449 CDD SF2_C_DEAD 223 352 - -
Csa05g00080 449 Gene3D - 217 389 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00080 K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3 [EC:3.6.4.13] - csv:101219259 847.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03422 Csa-Chr1:31158338 Csa05g00080 Csa-Chr5:395605 7.84E-73 dispersed
Csa03g00356 Csa-Chr3:2943915 Csa05g00080 Csa-Chr5:395605 4.63E-47 dispersed
Csa03g04201 Csa-Chr3:36847442 Csa05g00080 Csa-Chr5:395605 1.04E-81 dispersed
Csa04g00238 Csa-Chr4:1430645 Csa05g00080 Csa-Chr5:395605 4.64E-09 dispersed
Csa05g00080 Csa-Chr5:395605 Csa06g01154 Csa-Chr6:9625292 8.43E-120 dispersed
Csa05g00854 Csa-Chr5:6479569 Csa05g00080 Csa-Chr5:395605 6.04E-65 dispersed
Csa06g03809 Csa-Chr6:30233803 Csa05g00080 Csa-Chr5:395605 7.14E-53 dispersed
Csa05g00080 Csa-Chr5:395605 Csa01g00641 Csa-Chr1:4089424 5.32E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g348 . . . . . . . . Cmo06g01115 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00080 Chy09g01411 . . . . . . . . . . . . Cma06g01089 . Car06g00924 . Cpe08g00529 . . . . . . . . Cla01g00071 Cam01g0070 Cec01g0071 Cco01g0071 Clacu01g0071 Cmu01g0072 Cre09g2437 Lsi09g00051 . . Cme09g01955
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005266 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 2 1 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00080 Csa_Chr05 FPKM 99.210388 99.232376 86.471512 86.206192 88.2089 84.747841 89.694145 71.709366 69.635323 73.865196