Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00085 ATGAAGTGGATTCTTTTCACAATTGTTTCTCTCTTCATTTCCTTTCTTGTGAAGCTATTTGTTTTCCCTTCTAGACATGGCCCTTACAAGCTCCCACCAGGCCCTTTCTCACTCCCTATTCTCACTTATAACTTCCTATGGCTCCGCCAGTCCCCTCTTGATCTTGAGTCTATGTTACGTACATTCATCAATAAATACGGCCCCATCCTCACCGTTCACGTCGGCCCTTCTCCTGCCATCATCATCTCCGACCGCTCCATCGCCCACAAGGCTCTCATTCAAAATGGTGCCATTTTCGCCGACCGCCCCCGGACCCTCTCCATCACCAGGATTACTACTTCTGCCAAATTTGATAACATCACTTCTGCTCCTTACGGCCCCATTTGGCGCCTTCTCCGCCGCAACCTCGCGATGGAGATGTTCCACCCTTCGCGTGTCAGGGCTTATTCTCGGGCTCGCAAGTGGGTTTTGGATATCCTTGTCGCTCGCCTTTCAGCTCAACCGGGATCCGAAGGTGGCGCGGTTGTTGTTGAGCATTTTCAGTATTCTATGTTTTGTTTGTTGGTTTTGATGTGTTTTGGAGATAAGTTGAATGAGACACAAATCTTGGAAATTCAACAAGTGCAGCGTGATATTCTTGTGAATCTTCAACGATTTATTTTTCTTAATTTATGGCCTAAGTTGATGAAGGTTTTGCTTAGAAATCGCTGGAAGGAATATTTACAAATCAAGAATAGACAACGAAAGGTTTTAGTCCCATTTATCAAGGCACGAGAGAAGATCAAAGAAGAAAGAGCAAAAAAGGAAGGGGAAGAAAATGAAGAATTTGTTGTATCGTATGTTGATACGCTACTCGATTTACAACTCATCGACGAGAAAAGAAAGCTTAACAACGAAGAAATAGTGAATTTATGTTCGGAGTTTCTCAACGCTGGGACGGACACTACCGCCACGTCATTGCAATGGATCATGGCGAACTTAGTGAAGTACCCAAAAATTCAAGAAAAACTATTCCAAGAGATCAAAGGAGTAAAGGAGTCTGCTAGTACCAAAAAAGATGGATTACGGGAGGAGGAGGAGGTGAAGGAAGAGGATCTAGGGAAACTTCCATATTTGAAAGCTGTGATTCTAGAAGGATTGAGAAGGCATCCACCAGGGCATTTCATGGTACCACATGCAGTGAAAGAAGATACAACTTTGGAGAATTATTTCATACCAAAGAATGGCATCGTGAGTTTCTTTGCAGTGGGAATGGGGTTGGATCCACAAGTATGGGAAGATCCGATGGCGTTTAAGCCGGAGCGGTTCATGAGTGACGATGGCGGCAAGGCGGAGTACTCGACGACGTTTGATATCACAGGAAACAAGGAGATTAAGATGATGCCATTTGGAGCAGGGAGGAGGATGTGTCCAGGGACTTCTTTGGCAATTCTTCATTTGGAATATTTTGTAGCAAATTTGGTTTGGAGATTTGAGTGGAAAGCTGTGGAAGGAGAAGAGGTTGATTTATCAGAGAAAATGGAATTTACCATTGTTATGAAGAAGCCTCTCAGAGCCCATATTAATGAAAGGTTTTAG 1578 43.85 MKWILFTIVSLFISFLVKLFVFPSRHGPYKLPPGPFSLPILTYNFLWLRQSPLDLESMLRTFINKYGPILTVHVGPSPAIIISDRSIAHKALIQNGAIFADRPRTLSITRITTSAKFDNITSAPYGPIWRLLRRNLAMEMFHPSRVRAYSRARKWVLDILVARLSAQPGSEGGAVVVEHFQYSMFCLLVLMCFGDKLNETQILEIQQVQRDILVNLQRFIFLNLWPKLMKVLLRNRWKEYLQIKNRQRKVLVPFIKAREKIKEERAKKEGEENEEFVVSYVDTLLDLQLIDEKRKLNNEEIVNLCSEFLNAGTDTTATSLQWIMANLVKYPKIQEKLFQEIKGVKESASTKKDGLREEEEVKEEDLGKLPYLKAVILEGLRRHPPGHFMVPHAVKEDTTLENYFIPKNGIVSFFAVGMGLDPQVWEDPMAFKPERFMSDDGGKAEYSTTFDITGNKEIKMMPFGAGRRMCPGTSLAILHLEYFVANLVWRFEWKAVEGEEVDLSEKMEFTIVMKKPLRAHINERF* 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 418230 420031 + CsaV3_5G000850.1 Csa05g00085 528472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00085 525 Coils Coil 254 274 - -
Csa05g00085 525 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 PRINTS P450 superfamily signature 461 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 PRINTS P450 superfamily signature 470 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 Pfam Cytochrome P450 32 516 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 PRINTS E-class P450 group I signature 470 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 463 472 IPR017972 GO:0005506|GO:0016705
Csa05g00085 525 SUPERFAMILY Cytochrome P450 32 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 Gene3D Cytochrome P450 25 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00085 525 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 521 - -
Csa05g00085 525 PANTHER CYTOCHROME P450 5 521 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02815 Csa-Chr2:24504904 Csa05g00085 Csa-Chr5:418230 0 dispersed
Csa02g02817 Csa-Chr2:24509116 Csa05g00085 Csa-Chr5:418230 0 dispersed
Csa05g00085 Csa-Chr5:418230 Csa06g00755 Csa-Chr6:6107273 5.59E-163 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00085 K24184 - csv:101218555 1018.45