Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00086 ATGGAGATAGATGGGCTATGTGTTATTTGCGCTGGCATTGGAATCGTCGAGGAGGATGACTACGGCAATCGGATCGGTTACTCCAAAAACGAGTTCTGTTTAGATAATTTGAAGGATTTGCTTAGGTTCCTGAGGAGAGATGACCCGCAGACTCGCGATGTTTTTAAGCACGTTTGTAAATGGAACATTGTGGGTAAAGATTTGATTCCCATCATTGAGTACTGTCAAGATGATCGTAATGCAGTTTTAAATGCAGTGAAGATTTTGGTGTTCCTCACAATGCCTATCGAACCCACGTCAAGTGACATTGCACAACAGATCGAGTATCTATGGGGATTGAAGTCTTTAATCACATGCAGTAATGTTGTTGCCATAATTGTTTCACTTCTGGAGAGTCCGCTGGAAAATCTGGATTGCGGAACATTCTCAGAAGATGACTGGAAATTGTTGCAGTTGGTTATAACACTCTTCCGAAATGTTTTGGCTATTCAAGAAATCTCATTGCAGCAAAAGGCTGATGGATCAGCTTGTCAGTTAATATTGCTGAGAGACAAATTTTTGGAAGTTTTATTCCGGGAGAATGTTATGGACATAATATTGGTGATGACGCAGCACATTGATGGGTCTTGCAGCCATCTCCGTCAAGACAAATTAGTCTTTTTGGAAATATTTTACTACATATTTATGGGCCAAGAGCCTGAGTTAATCGCGAAAGTGCCTCAAAACAGCAGTGAGGAAAATGTAGAAACGGTATCTTCTGTCAATAGTCTGAAATCTATGATGGAGGAAGATAGAAGAAAGTTTTCTAGATTACAAAATTTGAACCGACATTCGCAGTTTAGTGGAACTTTTACTCGGCAAACCTTGGATGGTTCAAAGTTAGTACTCAAAGGAAAACCATCTTTGAGTTCTTCTACCAGCCATAAGCCACCTAAAGTTTGTCGAGGTCCAATTAAAAAAATTGCATGGGACCTTGGACGATTAACATCGAAAAACAGCAAACTTCTGCAGTTACTTCATGATTTTATTAATCAGTTTCTTTCAGGCGGCTACAATGCGCTGATGCAGTTGGTGCATGAAGATATTGAAAAGGAACATCATTCCATCCAGAACAACGATGTGGTGGTTTTTTTTCAGGTTGCACAGTTTGCTATTTCTTTTCAGTATCACAAGTTTTCAACTTCAAAGATAATTGAAGCTGAGACTGATGAGGCTCAAACAGAACATGCTGATTCCACATTTTTCCAAGGTAACATGTGCGGTCCAATAGCAGCAACAATGAACGAGGCAATGTTTCAGTTAGTTGTTTCCAAATGGCGTTATGCATTTGAAGGCTTAAAGGAAACTAATGACTTTAAGTTTCTGTCTGCTGCTGGCTCTCTGATGAAAAATATGATTTGCATGCTAGATTTGGTGCTAAAATTATTGCCAGAAGATTCAAAGGAACCTCAAACAGCTCGTATTCTACTTTACAAACTATTTTACGATCAGACAGATCAAGGGATGACTCAATTCCTTTTAAATTTGCTCAAGTCATTCAACACTCACAAACAACCCAAAAGTGATCTTGCAGATTTAGTTGAGATGGTCTACAAGGTTGTACAGCTTATGGAGAACCTCCAAGCACGTGGAACACTTCGGGTTTCCAAAAAATCAAGGAGGGGAAGAAAGGCAAAGTCAGCAAATAATGGGGACAATAAACAGTCAGAAGATCAGGGAGCTGAGAATAAGACGGCCATAACCCATAATGAGCAATCAACAGATGTTGATGTTTGTGAAAATAGTAACTTAAAAACGAGTCCTGATTGTAAAGAAGAGATATCTGTTACTGCTAATGCTGACGAACCTGAACTGTTAGACTTAAACTCGGGAAGTTTTGAAGGCAGTATGCCACAGAGAGAGAACAAAAATTTGAATGATGGTTACAGCACAGCCGACTCTTCTAGTGATGAACAGAAAAATAGAATTGTGGAGGTTGATCTTAAAGTGTCAAGTCTAGTATCTACTTTTGCCAATAACAACATTATTCAGAAGATATGCTGGTTGCTTAAGTTTTACAAGAGCAATGCTACTAGTACAAACCATTACATAATATGTATTTTACGGAAGATCACTGAGGAATTAGAGCTTTCTCCAATGCTGTACCAGTTATCCGTCCTTCCCACGTTTTATGATATTCTATCTGAACAGAAGTCAAGTCCATGCAAGGAGCATGCTACTATAGTTGATTTCCTGACGAGTCTGGTGAGAAAGATGCTACGAAAGATAAAGAATCAGCCACTCCTTTTTGTTGAAATCCTGTTTTGGAAGACCCGAAAAGAATGCCATTATATTGATGCTGAGTACTTAGTGCATGAGCTTGGCTGCTGGAAGAAAGAAAGTAGGGAGGAAAATTTTACCGGTGGTGATGAAAATGGCTCGTTGACAGGCAAGCATTGGACTCCCAGAAGCATAGCAGATGCACTTGGTGAAGATGAAGCTGATGTTGTGCTCACCAATAACGGGTTTGGATTTCATAGTGAAGCAAAGTCCGACGAAGTCAAGAAAGGCCTTGAGTCTACCAACTTGGATGATGAGATGGACAGAAAAGAACACAATGAAAATGAGCTGTCTATGGACAATAAGCCCAAAAGGCTTCCTAAAAGAAAGAGACTTGTTCTTGATGCGGCACTGGAGACGGAAATTAAAGATCTTTATGAGAAATTCAAGGAGGACAGGAACTGTAGCAAACTTATTGCGGAGAATCTTGATAATGATGTCAAAGTTTCGCCTGCCCAGGTTTCCAATAAGCTTAGACAGATGGGTTTGAAAGTTGTACAAAGAAAGAAGAGGCAGTATGCTGATGAAGGCTTTTCTGCTATTTCTGAAAACCTTGAAGGAGAAAGCAATGGGGAAGAACTACGTAACTCAAATGTTTTCGGGAAAAGTTCATTGAATCAACCTTCGCTCACTAGAAAAAGAATTCTTGCTTTTGATAAAGAACACGAAGAGAAGATTAGAGCTTTATATGAGCAGTTTAAAGACCATAAGAGATGTAGTTCTATGATTGCAAATGCGCTGGATGCTGATAACAAATTCACTCCTGCCCAAATTTCCCGAAAACTCAAGCAGTTGGGTTTGTATATTTCTCGTAAGAGAAAGTCAAGTGATGGGGATCGTAATGAATCTGCTATTGATAAGGAATCTGAAAGTGATGATGAAACATTGCTCTCATTAATAAATAGAAAAAAAGGGAAGCATCTTCCAAAGTCAACTGAAACGCCCAGTTCCATCTCAACACAGAGCATATTAATTGATGAGGAATCTGAAGGTGTAGCTGATGGAAGGTCCATGCAATTGGAGGATAGAAACCAAGCCAGTAGCTTGGAAACTATGGGGGTTGGTGGACCGCCTTCAGATGATGTTGACTTGAATGACTTTACGGAAAATCAAGGGAAGGATGCTGAAGCTGGCCGTGTCAATATGGATGATTTGATGCAAAAGGCCATGGAAGATGAGTTTGCAGATTCAGACAATGAAGTGTCTCCCAGTGTGTATCGTACAACGGGAAGAAAGTTTAGGATAGTTGATCTTGAGGATGAAGAATGA 3588 39.72 MEIDGLCVICAGIGIVEEDDYGNRIGYSKNEFCLDNLKDLLRFLRRDDPQTRDVFKHVCKWNIVGKDLIPIIEYCQDDRNAVLNAVKILVFLTMPIEPTSSDIAQQIEYLWGLKSLITCSNVVAIIVSLLESPLENLDCGTFSEDDWKLLQLVITLFRNVLAIQEISLQQKADGSACQLILLRDKFLEVLFRENVMDIILVMTQHIDGSCSHLRQDKLVFLEIFYYIFMGQEPELIAKVPQNSSEENVETVSSVNSLKSMMEEDRRKFSRLQNLNRHSQFSGTFTRQTLDGSKLVLKGKPSLSSSTSHKPPKVCRGPIKKIAWDLGRLTSKNSKLLQLLHDFINQFLSGGYNALMQLVHEDIEKEHHSIQNNDVVVFFQVAQFAISFQYHKFSTSKIIEAETDEAQTEHADSTFFQGNMCGPIAATMNEAMFQLVVSKWRYAFEGLKETNDFKFLSAAGSLMKNMICMLDLVLKLLPEDSKEPQTARILLYKLFYDQTDQGMTQFLLNLLKSFNTHKQPKSDLADLVEMVYKVVQLMENLQARGTLRVSKKSRRGRKAKSANNGDNKQSEDQGAENKTAITHNEQSTDVDVCENSNLKTSPDCKEEISVTANADEPELLDLNSGSFEGSMPQRENKNLNDGYSTADSSSDEQKNRIVEVDLKVSSLVSTFANNNIIQKICWLLKFYKSNATSTNHYIICILRKITEELELSPMLYQLSVLPTFYDILSEQKSSPCKEHATIVDFLTSLVRKMLRKIKNQPLLFVEILFWKTRKECHYIDAEYLVHELGCWKKESREENFTGGDENGSLTGKHWTPRSIADALGEDEADVVLTNNGFGFHSEAKSDEVKKGLESTNLDDEMDRKEHNENELSMDNKPKRLPKRKRLVLDAALETEIKDLYEKFKEDRNCSKLIAENLDNDVKVSPAQVSNKLRQMGLKVVQRKKRQYADEGFSAISENLEGESNGEELRNSNVFGKSSLNQPSLTRKRILAFDKEHEEKIRALYEQFKDHKRCSSMIANALDADNKFTPAQISRKLKQLGLYISRKRKSSDGDRNESAIDKESESDDETLLSLINRKKGKHLPKSTETPSSISTQSILIDEESEGVADGRSMQLEDRNQASSLETMGVGGPPSDDVDLNDFTENQGKDAEAGRVNMDDLMQKAMEDEFADSDNEVSPSVYRTTGRKFRIVDLEDEE* 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 420728 429410 + CsaV3_5G000860.1 Csa05g00086 528473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00086 1195 PANTHER PROTEIN TIMELESS HOMOLOG 3 1149 - -
Csa05g00086 1195 Pfam Timeless protein 27 285 IPR006906 -
Csa05g00086 1195 MobiDBLite consensus disorder prediction 545 600 - -
Csa05g00086 1195 MobiDBLite consensus disorder prediction 1139 1154 - -
Csa05g00086 1195 MobiDBLite consensus disorder prediction 624 650 - -
Csa05g00086 1195 MobiDBLite consensus disorder prediction 847 875 - -
Csa05g00086 1195 MobiDBLite consensus disorder prediction 1046 1154 - -
Csa05g00086 1195 PANTHER TIMEOUT/TIMELESS-2 3 1149 IPR044998 -
Csa05g00086 1195 MobiDBLite consensus disorder prediction 565 600 - -
Csa05g00086 1195 MobiDBLite consensus disorder prediction 625 650 - -
Csa05g00086 1195 MobiDBLite consensus disorder prediction 1046 1083 - -
Csa05g00086 1195 MobiDBLite consensus disorder prediction 1084 1099 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00086 K03155 TIMELESS; timeless - csv:101218315 2317.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g830 . Blo15g00103 . . . Bpe07g01002 . . . . . . . . . . . . . . . . . . Cla01g00074 Cam01g0074 . Cco01g0075 Clacu01g0075 Cmu01g0076 Cre09g2433 . . . . . Csa05g00086 . . . . Bda06g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00056 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011825 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00086 Csa_Chr05 FPKM 6.725 8.090097 3.779015 6.731812 2.585013 1.954873 2.733852 18.126524 15.94226 18.814659