Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00095 ATGGAACAGAAGCACATTTTTCTATCTGCTTTGGGTGTTGGTGTTGGAGTCGGGGTTGGCCTTGGATTGAGCTCTGGACAAGCTGTTGGGAAGTGGGTTGGAGGAAATGGCTCTTCTGATGAAATTACAGGCCAAAATATTGAACAGGAGCTGATCAGGCAGCTGCTTGATGGCAAAAACAGCAATGTAACTTTTGCTGAGTTTCCTTATTATCTAAGCGAAAGGACTCGAGTCCTTTTGATGAGTGCTGCATATGTTCATTTGAAGCACTGTGACATCTCCAAGCACACCAGGAATCTTTCACCAGCTAGTCGGGCTATTTTGCTTTCAGGACCAACAGAACTTTACCAGCAGATGCTTGCCAAGGCACTGGCGCATCACTTTGAGTCGAAGTTGCTGTTGTTAGACGTCTCTGACTTCTCTTTAAAGATGCAGAGCAAATACGGTTGTCCCAAGAAAGATTCTTCATTCAGGAGATCGATCTCTGAGGTGACATTGGAGCGAATGTCTAGCGTTTGGGGTTCCTTTTCAATTCTTCCTACAAGTGGAAATACTAGGGGAAATCTCAGAAGGCAAAGCAGTACCACCGACATTCAATCGAGATGCTCGGATAGCTCATCTAATCTTCCAAAGCTTCGGAGAAATGCTTCTGCTGCTTCTGATATCAGTAGTATCTCATCAAACTATGGTTCAACAAACTCAGCTTCCGCCAAGCGCACAAATACTTGGTGCTTTGATGAGAAACTTTTTCTTCAGTCACTTTATAAGGTCCTGGTGTCGGTATCAGAAACTACTTCCATAATTTTGTATCTGAGAGATGTTGAGAGACTTCTTCTTAAGTCACAGAGGATATACAATCTGTTCCATAGATTTCTGAACAAGCTCTCAGGATCAATTTTAGTCCTTGGTTCTCGAATGGTTGATGTTGAAAATGATTGTGGGGATGTTGACGACAGATTGACCAATTTATTCCGGTATAGTGTTGAAATTCGACCCCCTGAAGATGAGAACCATCTTGTCAGCTGGAAAGCTCAATTGGAAGAGGATATGAAGATGATTCAGTTCCAAGATAATAAAAATCACATCGCTGAAGTACTTGCTGCAAATGATCTTGAATGTGATGATCTTGGTTCAATTTGCCATGCAGACACTATGGTTCTAAGTAATTATATTGAAGAAATTGTCGTGTCGGCGATATCGTATCATTTGATGAACAACCGGGATCCAGAATACCGAAATGGAAAACTTCTGATATCTTCCAAGAGTTTATCCCATGGATTGGGTATATTCCAGGAAGGCAATAGTGAAGGAAAAGACACTCTAAAGCTTGAGACAAATGCAGAATCATCAAAGGAAGCCCAAAGGGACGAAGCTGTTGGGGCAAAGACTGAATCTAAATCTGAAAATCCAGCTACAGAGGCAGAGAAATCTGTTCCCATAGTGAAAAAAGATGTTGAAAATGTGCCTCCACAAAAAGCACCTGAAATTCCTCCTGACAACGAATTTGAGAAGCGTATAAGACCTGAAGTTATCCCTGCAAATGAAATTGGGGTCACATTTGCAGACATTGGTGCTATGGATGAAATCAAAGAGTCCTTACAGGAATTAGTCATGCTTCCTCTTCGACGACCAGACCTCTTTAAGGGCGGACTTCTTAAACCTTGTAGGGGCATCCTGCTTTTCGGCCCTCCTGGAACGGGTAAAACAATGTTGGCAAAGGCCATTGCTAATGAAGCCGGAGCAAGTTTCATCAATGTTTCAATGTCCACAATTACTTCTAAATGGTTTGGAGAAGATGAGAAGAATGTCCGTGCATTGTTTACGCTTGCAGCAAAAGTCTCACCTACAATTATTTTTGTCGACGAAGTCGATAGCATGCTCGGCCAAAGGACTAGAGTGGGAGAGCACGAGGCCATGCGAAAGATTAAAAATGAATTCATGTCACATTGGGATGGACTCCTGACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCAACCAACAGGCCGTTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGTCGAATTATGGTTGGTCTTCCATCAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATATAGTGGAAGTGATCTCAAGAACTTGTGTGTGACTGCAGCTTATCGGCCTGTTCGGGAGCTCTTGCAACAGGAGAGATTGAAAGATTTGGAAAAGAAGCAGAGAGAGAAAAAGGAGAAGGAGAAGCAGAAGGAGAAGGAGAAGCAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGATGGAAAAGGAGAAGCAAAAGGAGGAGAAGGAGACTGAAACCAAGAATGAGACCGGGAACGAGAATGGGAAGAAGGAGAATGAAAATAATTCGGAAGAAGTTACAGGTACAAAAGAGACAGAACAAGATAAACAAGCGATCATTCTGAGGCATCTAAATATGGATGATATGAGGCAGGCCAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAGGGATCAGTTATGAATGAGTTGAAGCAATGGAATGATTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAACTTACATACTTCTTATAG 2652 42.46 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVGGNGSSDEITGQNIEQELIRQLLDGKNSNVTFAEFPYYLSERTRVLLMSAAYVHLKHCDISKHTRNLSPASRAILLSGPTELYQQMLAKALAHHFESKLLLLDVSDFSLKMQSKYGCPKKDSSFRRSISEVTLERMSSVWGSFSILPTSGNTRGNLRRQSSTTDIQSRCSDSSSNLPKLRRNASAASDISSISSNYGSTNSASAKRTNTWCFDEKLFLQSLYKVLVSVSETTSIILYLRDVERLLLKSQRIYNLFHRFLNKLSGSILVLGSRMVDVENDCGDVDDRLTNLFRYSVEIRPPEDENHLVSWKAQLEEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLGIFQEGNSEGKDTLKLETNAESSKEAQRDEAVGAKTESKSENPATEAEKSVPIVKKDVENVPPQKAPEIPPDNEFEKRIRPEVIPANEIGVTFADIGAMDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQREKKEKEKQKEKEKQKEKEKEKEKEEEMEKEKQKEEKETETKNETGNENGKKENENNSEEVTGTKETEQDKQAIILRHLNMDDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL* 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 471727 478752 + CsaV3_5G000950.1 Csa05g00095 528482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00095 883 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 782 - -
Csa05g00095 883 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 790 883 - -
Csa05g00095 883 ProSitePatterns AAA-protein family signature. 661 680 IPR003960 GO:0005524|GO:0016887
Csa05g00095 883 MobiDBLite consensus disorder prediction 184 214 - -
Csa05g00095 883 SMART AAA_5 554 691 IPR003593 -
Csa05g00095 883 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 790 883 - -
Csa05g00095 883 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 782 - -
Csa05g00095 883 Pfam AAA+ lid domain 710 753 IPR041569 -
Csa05g00095 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 768 IPR027417 -
Csa05g00095 883 MobiDBLite consensus disorder prediction 446 478 - -
Csa05g00095 883 MobiDBLite consensus disorder prediction 755 826 - -
Csa05g00095 883 Gene3D - 517 782 IPR027417 -
Csa05g00095 883 CDD AAA 524 689 - -
Csa05g00095 883 Pfam ATPase family associated with various cellular activities (AAA) 558 688 IPR003959 GO:0005524|GO:0016887
Csa05g00095 883 Gene3D - 690 773 - -
Csa05g00095 883 Coils Coil 743 801 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00095 - - - csv:101216426 1566.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00095 Csa-Chr5:471727 Csa07g01824 Csa-Chr7:18428229 2.04E-13 dispersed
Csa01g01705 Csa-Chr1:13436310 Csa05g00095 Csa-Chr5:471727 1.58E-08 transposed
Csa01g01706 Csa-Chr1:13438022 Csa05g00095 Csa-Chr5:471727 8.13E-105 transposed
Csa04g00619 Csa-Chr4:4100956 Csa05g00095 Csa-Chr5:471727 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00095 Csa_Chr05 FPKM 5.267061 5.9634 13.846572 15.954301 6.58545 6.371643 6.873054 10.610357 11.84001 11.196333