Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00101 | ATGGCTGCCGGAAACGACGATTGGGATCTTTCCGCCGTCGTCCGGAGTTGCAATTCAGCTGGTTCCGCTACTGACCCAACATCCGCCGCGGCGGAAGAATCTGCGTTGTCTTGTCTAGCTTCTTTAACGTTCGACGACGATCCAAACGACGTCGCATTCTCCTTTTCCGATATCTTTCAACCAAAACAGCCAAACGGCTTCCATGAGTTACACCAAGCCTTCATCTCTTTTCTCCCTAACCCCTCCACCACCGCCACCACCGTCACAACCGTACCTGCTGCTGAGCCCGAAATCCCTTACTTAACAACCCCCCCGACGAATCGCCATTTCCGTCAGGTAATGAAACCCATTCGGCCAAACCCACACCCACATCCTGTGGCGCTGCACCACCACCACCGGCAACCGCCGTTTTCGCCGGACCTCCCTAATTCGCCAATGACGCATTCTCTCATACCTAAATCGAGAAAAAGAAAGAACCAACAGAAGAGAAGGGTATGCCATGTTACTGCAGATAACCTCTCGACGGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCGTATCCAAGAAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGAGCAAGAAAGCAAGTTGAACGCAGCAACGACGATCCCGAAACTTTCACCATCACATACACCGGCGATCACTCTCATCCCCGTCCAACTCACCGTAATTCCCTCGCCGGAAGTTCCCGCAACAGGTCCTCCTCCTCCTCCTCCTCCTCCCGACACCCCACCATGGGTGATTCCGATCCCCCGATGATGACCGCCTCCGTTCTCCTACCCTCCTCCTCTTCCCCTGCAGCTTCTCCCATCACACCGCTGAACGACTACGATTCCACCATCGGCGAGAAAGATGGAGAGATGTTTGAAGATATGCCGATTGATAGTGACGATGAAGACGATGATGACGATATTCTGATCCCGAACCTGACGGTGAGAGATGAAATCTATGTTGGGTTTGATGGGGTTGGGAGGGGACGGTCATCGTAA | 1035 | 52.95 | MAAGNDDWDLSAVVRSCNSAGSATDPTSAAAEESALSCLASLTFDDDPNDVAFSFSDIFQPKQPNGFHELHQAFISFLPNPSTTATTVTTVPAAEPEIPYLTTPPTNRHFRQVMKPIRPNPHPHPVALHHHHRQPPFSPDLPNSPMTHSLIPKSRKRKNQQKRRVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSNDDPETFTITYTGDHSHPRPTHRNSLAGSSRNRSSSSSSSSRHPTMGDSDPPMMTASVLLPSSSSPAASPITPLNDYDSTIGEKDGEMFEDMPIDSDDEDDDDDILIPNLTVRDEIYVGFDGVGRGRSS* | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 504127 | 505921 | - | CsaV3_5G001010.1 | Csa05g00101 | 528488 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00101 | 344 | MobiDBLite | consensus disorder prediction | 201 | 318 | - | - | |
Csa05g00101 | 344 | SMART | WRKY_cls | 174 | 234 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa05g00101 | 344 | Pfam | WRKY DNA -binding domain | 176 | 233 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa05g00101 | 344 | Gene3D | WRKY domain | 158 | 228 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa05g00101 | 344 | MobiDBLite | consensus disorder prediction | 237 | 261 | - | - | |
Csa05g00101 | 344 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 6 | 337 | IPR044810 | GO:0003700 | |
Csa05g00101 | 344 | PANTHER | WRKY TRANSCRIPTION FACTOR 27-RELATED | 6 | 337 | - | - | |
Csa05g00101 | 344 | MobiDBLite | consensus disorder prediction | 271 | 291 | - | - | |
Csa05g00101 | 344 | ProSiteProfiles | WRKY domain profile. | 169 | 235 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa05g00101 | 344 | SUPERFAMILY | WRKY DNA-binding domain | 169 | 235 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa05g00101 | 344 | MobiDBLite | consensus disorder prediction | 120 | 165 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00101 | Csa-Chr5:504127 | Csa06g03875 | Csa-Chr6:30645979 | 4.23E-34 | dispersed | |
Csa03g00861 | Csa-Chr3:7225695 | Csa05g00101 | Csa-Chr5:504127 | 6.73E-51 | wgd | |
Csa04g00611 | Csa-Chr4:4040395 | Csa05g00101 | Csa-Chr5:504127 | 1.72E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31659 | PF03106 | WRKY | 6.20E-26 | CL0274 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00101 | - | K13425 | csv:101216181 | 609.757 |