Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00101 ATGGCTGCCGGAAACGACGATTGGGATCTTTCCGCCGTCGTCCGGAGTTGCAATTCAGCTGGTTCCGCTACTGACCCAACATCCGCCGCGGCGGAAGAATCTGCGTTGTCTTGTCTAGCTTCTTTAACGTTCGACGACGATCCAAACGACGTCGCATTCTCCTTTTCCGATATCTTTCAACCAAAACAGCCAAACGGCTTCCATGAGTTACACCAAGCCTTCATCTCTTTTCTCCCTAACCCCTCCACCACCGCCACCACCGTCACAACCGTACCTGCTGCTGAGCCCGAAATCCCTTACTTAACAACCCCCCCGACGAATCGCCATTTCCGTCAGGTAATGAAACCCATTCGGCCAAACCCACACCCACATCCTGTGGCGCTGCACCACCACCACCGGCAACCGCCGTTTTCGCCGGACCTCCCTAATTCGCCAATGACGCATTCTCTCATACCTAAATCGAGAAAAAGAAAGAACCAACAGAAGAGAAGGGTATGCCATGTTACTGCAGATAACCTCTCGACGGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCGTATCCAAGAAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGAGCAAGAAAGCAAGTTGAACGCAGCAACGACGATCCCGAAACTTTCACCATCACATACACCGGCGATCACTCTCATCCCCGTCCAACTCACCGTAATTCCCTCGCCGGAAGTTCCCGCAACAGGTCCTCCTCCTCCTCCTCCTCCTCCCGACACCCCACCATGGGTGATTCCGATCCCCCGATGATGACCGCCTCCGTTCTCCTACCCTCCTCCTCTTCCCCTGCAGCTTCTCCCATCACACCGCTGAACGACTACGATTCCACCATCGGCGAGAAAGATGGAGAGATGTTTGAAGATATGCCGATTGATAGTGACGATGAAGACGATGATGACGATATTCTGATCCCGAACCTGACGGTGAGAGATGAAATCTATGTTGGGTTTGATGGGGTTGGGAGGGGACGGTCATCGTAA 1035 52.95 MAAGNDDWDLSAVVRSCNSAGSATDPTSAAAEESALSCLASLTFDDDPNDVAFSFSDIFQPKQPNGFHELHQAFISFLPNPSTTATTVTTVPAAEPEIPYLTTPPTNRHFRQVMKPIRPNPHPHPVALHHHHRQPPFSPDLPNSPMTHSLIPKSRKRKNQQKRRVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSNDDPETFTITYTGDHSHPRPTHRNSLAGSSRNRSSSSSSSSRHPTMGDSDPPMMTASVLLPSSSSPAASPITPLNDYDSTIGEKDGEMFEDMPIDSDDEDDDDDILIPNLTVRDEIYVGFDGVGRGRSS* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 504127 505921 - CsaV3_5G001010.1 Csa05g00101 528488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00101 344 MobiDBLite consensus disorder prediction 201 318 - -
Csa05g00101 344 SMART WRKY_cls 174 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g00101 344 Pfam WRKY DNA -binding domain 176 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g00101 344 Gene3D WRKY domain 158 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa05g00101 344 MobiDBLite consensus disorder prediction 237 261 - -
Csa05g00101 344 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 337 IPR044810 GO:0003700
Csa05g00101 344 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 6 337 - -
Csa05g00101 344 MobiDBLite consensus disorder prediction 271 291 - -
Csa05g00101 344 ProSiteProfiles WRKY domain profile. 169 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g00101 344 SUPERFAMILY WRKY DNA-binding domain 169 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa05g00101 344 MobiDBLite consensus disorder prediction 120 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00101 Csa-Chr5:504127 Csa06g03875 Csa-Chr6:30645979 4.23E-34 dispersed
Csa03g00861 Csa-Chr3:7225695 Csa05g00101 Csa-Chr5:504127 6.73E-51 wgd
Csa04g00611 Csa-Chr4:4040395 Csa05g00101 Csa-Chr5:504127 1.72E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31659 PF03106 WRKY 6.20E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00101 - K13425 csv:101216181 609.757