Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00103 ATGAAGAAAGTTATCGTGAAATTGGATGTTTCTGATGAAAAATCTAAGCAAAAAGCTATGAGTGTTGTGTCTAGCCTATCAGGAGTGAACTCGATCTCAATGGACATGAAAGAGAAGAAGCTGACAGTAACAGGAGATGTAGATCCAGTAGTGATTGTAGGCAAATTAAGGAAAATTTGTCATACAACAATAGTTTCCGTTGGACCAGAGAAAGAAGAGAAGAAACCAGAACCAAAGAAAGATGAACCAAAGAAGGAAGATCCAAAAAAAGCAGCTGAGGAAAAGAAGAAAGAAGAACAAAAACTTGCTGAGCTCATCAAAGCTTGTCAACAATATCAAGCTTATAATTATCTCTATTGCAATCCACCAGTTTTCTACCCTCCTCCTAGATGCATTAGCATTGAAGAAGATCCAAATGCTTGTGTTATTTGTTAA 435 36.55 MKKVIVKLDVSDEKSKQKAMSVVSSLSGVNSISMDMKEKKLTVTGDVDPVVIVGKLRKICHTTIVSVGPEKEEKKPEPKKDEPKKEDPKKAAEEKKKEEQKLAELIKACQQYQAYNYLYCNPPVFYPPPRCISIEEDPNACVIC* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 521724 523679 - CsaV3_5G001030.1 Csa05g00103 528490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00103 144 Pfam Heavy-metal-associated domain 9 58 IPR006121 GO:0046872
Csa05g00103 144 Coils Coil 95 115 - -
Csa05g00103 144 SUPERFAMILY HMA, heavy metal-associated domain 2 62 IPR036163 GO:0046872
Csa05g00103 144 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 1 144 - -
Csa05g00103 144 MobiDBLite consensus disorder prediction 67 97 - -
Csa05g00103 144 PANTHER ION-BINDING PROTEIN, PUTATIVE-RELATED 1 144 - -
Csa05g00103 144 Gene3D - 1 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00103 - - - csv:101215695 221.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00103 Csa-Chr5:521724 Csa05g00243 Csa-Chr5:1483491 7.72E-33 dispersed
Csa03g00863 Csa-Chr3:7251170 Csa05g00103 Csa-Chr5:521724 5.10E-23 wgd
Csa04g00608 Csa-Chr4:4008731 Csa05g00103 Csa-Chr5:521724 4.57E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g771 . . . . Bpe03g00262 . Bma10g01255 . . . . Cma15g01070 . . . . . . . . . . . . Cla01g00091 Cam01g0092 Cec01g0092 Cco01g0093 Clacu01g0090 Cmu01g0092 Cre09g2415 . . . . . Csa05g00103 . . Blo07g00372 . . . . . . . . . Cmo15g01127 . . . . . Cpe13g00274 . . . . . . . . . . . . . . . . . Cme09g01936
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000207 7 7 3 10 7 4 5 6 5 3 4 5 6 7 6 6 5 9 5 5 7 5 5 4 6 4 5 12 6 6 175
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00103 Csa_Chr05 FPKM 15.547945 18.107552 17.021368 18.284704 10.688382 10.847088 10.650897 13.365308 14.250816 12.988268