Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00104 ATGGTGTCTAATAATCCCAATCCCTCTGAGGGATTCTACTTAGATCCATCAGGAATGGCGTTACCGGGACTAGGACCGTTTGCCACCTCTATGGCAGCGTCTGAGGATTTGTCCAAGAAGATTCGTAAGCCTTACACAATTACCAAGTCTAGAGAGAGTTGGACTGAACCTGAGCACGACAAGTTCCTTGAAGCCCTTCAGCTATTTGATCGCGACTGGAAGAAAATTGAAGCTTTTGTTGGGTCAAAAACTGTTATACAGATACGTAGTCATGCACAAAAGTACTTCTTAAAAGTTCAGAAAACTGGAGGTGGAGAGCATTTGCCCCCTCCACGACCAAAGAGGAAGGCTTCTCATCCATATCCTCAGAAGGCATCAAAAAATGTTGCCATGCCTTCTCAAGTGCCAGGGTCCTTGCAGTCAACTTCTCCTCCCGTAGAATCTGGATACACTATAAGGCCAGATTCATCTTCAATACTTACATGTCCGGGACCTGCTGGGGCTGTACCTTCCTGGACAGTGAACTCTGTCCAGCCACTCAATTCGGCTCAAGTGCCAACAACGGCAAATAATTGTTGCAGTAGTACTGAAAGCCCTTCAAAAGCCCGCCCTCTTGTTGAAACAATTGATCAAGGAAGTAACAATCATTCTCTTAGAGTTTTGCCAGATTTCTCACAGGTTTACAGATTCATTGGCAGTGTTTTTGACCCGAACGCTTCAGGTCATCTGCAAAAGTTGAAGAGGATGGACCCAATTGATGTCGAAACTGTTCTGCTGTTGATGAGAAACTTATCCATCAATCTGATCAGTCCTGATTTTGAGGATCATAAAAAGTTGCTTTCATCCTATGAGATTGATTCAGGGCCAATTCGGCATGGCGATATGGATAAGCCCATCTATATCGATGATCATAAATCCAATTTGGTATCCAACTAG 936 44.12 MVSNNPNPSEGFYLDPSGMALPGLGPFATSMAASEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKTGGGEHLPPPRPKRKASHPYPQKASKNVAMPSQVPGSLQSTSPPVESGYTIRPDSSSILTCPGPAGAVPSWTVNSVQPLNSAQVPTTANNCCSSTESPSKARPLVETIDQGSNNHSLRVLPDFSQVYRFIGSVFDPNASGHLQKLKRMDPIDVETVLLLMRNLSINLISPDFEDHKKLLSSYEIDSGPIRHGDMDKPIYIDDHKSNLVSN* 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 528092 533031 + CsaV3_5G001040.1 Csa05g00104 528491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00104 311 MobiDBLite consensus disorder prediction 127 157 - -
Csa05g00104 311 SMART sant 50 98 IPR001005 -
Csa05g00104 311 CDD SANT 53 96 IPR001005 -
Csa05g00104 311 PANTHER PROTEIN REVEILLE 6 20 292 - -
Csa05g00104 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 98 IPR006447 GO:0003677
Csa05g00104 311 MobiDBLite consensus disorder prediction 101 157 - -
Csa05g00104 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 100 IPR017930 -
Csa05g00104 311 Pfam Myb-like DNA-binding domain 51 96 IPR001005 -
Csa05g00104 311 PANTHER SWI/SNF COMPLEX-RELATED 20 292 - -
Csa05g00104 311 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Csa05g00104 311 Gene3D - 54 101 - -
Csa05g00104 311 ProSiteProfiles Myb-like domain profile. 46 96 IPR001005 -
Csa05g00104 311 ProSiteProfiles SANT domain profile. 49 100 IPR017884 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00104 - - - csv:101215465 634.795
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g01749 Csa05g00104 CCT
Csa03g01749 Csa05g00104 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00104 Csa-Chr5:528092 Csa03g03106 Csa-Chr3:29081393 2.18E-08 dispersed
Csa01g00523 Csa-Chr1:3462979 Csa05g00104 Csa-Chr5:528092 1.73E-32 transposed
Csa03g01749 Csa-Chr3:13095764 Csa05g00104 Csa-Chr5:528092 4.59E-90 transposed
Csa03g03239 Csa-Chr3:29719250 Csa05g00104 Csa-Chr5:528092 2.22E-84 transposed
Csa05g01437 Csa-Chr5:15524117 Csa05g00104 Csa-Chr5:528092 3.92E-32 transposed
Csa06g00836 Csa-Chr6:6710104 Csa05g00104 Csa-Chr5:528092 2.55E-30 transposed
Csa03g00867 Csa-Chr3:7271628 Csa05g00104 Csa-Chr5:528092 2.02E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g765 Blo06g01137 . . . . Bpe07g00926 . . Cmo16g00104 Cmo18g01301 Cma02g01081 Cma15g01071 Car02g00823 Car15g00991 . Cpe05g00639 Cpe14g00081 . . . . . . . Cla01g00092 Cam01g0093 Cec01g0093 Cco01g0094 Clacu01g0091 Cmu01g0093 Cre09g2414 Cone1ag1192 Cone5ag0893 Cone14ag0055 . . Csa05g00104 Chy09g01391 . . . Bda06g00695 Bda15g00710 . Bpe12g00443 Bma08g00292 Bma12g01109 . Cmo02g01099 Cmo15g01128 Cma16g00097 Cma18g01270 Car16g00087 Car18g01182 Cpe09g00066 Cpe13g00273 Bhi12g00778 . . Lac11g0071 . . Lcy12g0058 Cla05g00915 Cam05g1001 Cec05g1005 Cco05g1002 Clacu05g0989 Cmu05g0945 . Lsi09g00078 Csa03g01749 Chy06g00978 Cme09g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001829 2 1 2 1 2 2 5 2 2 2 2 2 5 2 2 4 2 3 5 1 2 2 2 2 2 1 2 2 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31660 PF00249 Myb_DNA-binding 3.80E-10 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00104 Csa_Chr05 FPKM 16.007383 15.924211 29.667517 29.604767 16.788227 16.135738 19.305359 19.227468 23.517111 25.502386