Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00109 ATGGATTCAAACGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGAATTACGGAAGCGGCTCTCATTAAACTCTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGGCCGAAGCGTGGGGAGCCACGGGGATTTGCCTTCATCGAGTACAGCTCCAAGGAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGGAAATTAGCTTGTGGTCGTCCGTTGGTCGTTCGCCTCGCTAGTGAAAAGTTAATGACGAACACAACGAATGATACTTCAAGAACAGCAAGCGAGTCGAGAAAATCAAGACTCGGTGGCAGCAGTTACGGGCAGTTGACTCGCAGCGATAAGATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAGTGTGAAAAAACCGAAGCAAGATAATATCAGTTACAAAGATCATAATGATAAGTCATCTCTCAAGCCATCTTGA 516 44.38 MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMTNTTNDTSRTASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISYKDHNDKSSLKPS* 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 543032 544883 + CsaV3_5G001090.1 Csa05g00109 528496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00109 171 MobiDBLite consensus disorder prediction 154 171 - -
Csa05g00109 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Csa05g00109 171 MobiDBLite consensus disorder prediction 141 171 - -
Csa05g00109 171 MobiDBLite consensus disorder prediction 94 122 - -
Csa05g00109 171 SUPERFAMILY RNA-binding domain, RBD 13 106 IPR035979 GO:0003676
Csa05g00109 171 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 166 - -
Csa05g00109 171 CDD RRM_RBM18 14 93 IPR039157 -
Csa05g00109 171 PANTHER RNA-BINDING PROTEIN 18-RELATED 8 166 - -
Csa05g00109 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Csa05g00109 171 Gene3D - 7 132 IPR012677 -
Csa05g00109 171 SMART rrm1_1 14 90 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00109 K24527 RBM18; RNA-binding protein 18 - csv:101215222 337.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00109 Csa-Chr5:543032 Csa03g01588 Csa-Chr3:11779608 4.44E-11 dispersed
Csa05g00109 Csa-Chr5:543032 Csa02g01693 Csa-Chr2:16130690 7.38E-10 transposed
Csa05g00109 Csa-Chr5:543032 Csa02g01672 Csa-Chr2:15963123 8.73E-10 transposed
Csa05g00109 Csa-Chr5:543032 Csa03g01837 Csa-Chr3:14099253 2.11E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g748 . Blo15g00177 . . . Bpe07g00927 . . . . Cma02g01078 . Car02g00821 . . Cpe05g00641 . . . . . . . . Cla01g00094 Cam01g0096 Cec01g0096 Cco01g0097 Clacu01g0094 Cmu01g0096 Cre09g2411 . . Cone14ag0061 Cone15ag0064 . Csa05g00109 Chy09g01386 . . . Bda06g00694 . . . . Bma12g01110 . Cmo02g01095 . . . . . . . Bhi12g00787 . . . . . . . . . . . . . Lsi09g00082 . . Cme09g01931
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007148 1 7 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00109 Csa_Chr05 FPKM 20.664137 21.437983 27.755924 28.15661 43.787685 43.764126 44.456184 2.824197 2.358658 2.573667