Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00121 ATGTGGTTTGTTAGCAGGAAGGGGCCATCTGGGTTCTCAGCTTCTTCCACGGCTGAAGAAGTTACACAAGGAATCAATGGAACTGGCCTCACAGCCATTGTTACAGGTGCTTCAAGTGGCATTGGCACTGAAACTGCTCGTGTTCTTGCATTGCGCGGAGTACATGTAGTAATGGCGGTTAGAAATGTAGCAACTGGTAGGGAGGTTCAAGAAGCCATTATCAAGGAAAACCCAACTGCTAAAGTTGACACCATGGAGCTGGACCTGAGCTCAATGGCATCTGTTAGGAATTTTGCTTCAAATTTCAAGTCCTCAGGTCTTCCACTGAATATTCTTGTTAATAATGCAGGAGTCATGGCTTCCCCCTTCTTGCTCTCGAAGGACAAGATAGAATTGCAGTTTGCAACAAACCATGTGGGACATTTTCTTTTGACAAATCTACTGTTGGAGACATTGAAAAAGACAGCAAAAAATAGTGAAAGAGAAGGAAGGATTGTCAATGTCTCGTCACGACGGCACCAATTTTCGTATCGTGAAGGCATCCGATTTGACAAAATCAATGATCAATCAGGCTATAACGGTCTATCTGCATATGGTCAATCAAAGCTTGCTAATATTTTGCATGCTTCCGAACTTGCAAGACAGCTGAAGGAAGAAGGGGTGAAGATCACTGCAAATTCACTACATCCTGGAGCCATTCCTACCAACCTATTTCGTTATCATAACCTCATCAACGGTTTTCTTGGTGTTCTGGGTAAACATGTCATGAAGAATGTACAACAGGGAGCAGCGACAACATGCTATGTTGCATTGCATCAACAAATCAATGGGATCAGTGGCCAGTATTTTGCTGACAGTAACATAGCCAAAGCAAATTCACAAGCTAATGATAGTGAATTGGCAAAGAGACTGTGGGATTTCACCCAGAAGTTGGTATCTAGTGGTTTACAAACTCCTTAA 960 42.81 MWFVSRKGPSGFSASSTAEEVTQGINGTGLTAIVTGASSGIGTETARVLALRGVHVVMAVRNVATGREVQEAIIKENPTAKVDTMELDLSSMASVRNFASNFKSSGLPLNILVNNAGVMASPFLLSKDKIELQFATNHVGHFLLTNLLLETLKKTAKNSEREGRIVNVSSRRHQFSYREGIRFDKINDQSGYNGLSAYGQSKLANILHASELARQLKEEGVKITANSLHPGAIPTNLFRYHNLINGFLGVLGKHVMKNVQQGAATTCYVALHQQINGISGQYFADSNIAKANSQANDSELAKRLWDFTQKLVSSGLQTP* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 613328 617102 + CsaV3_5G001210.1 Csa05g00121 528508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00121 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Csa05g00121 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Csa05g00121 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Csa05g00121 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 288 IPR036291 -
Csa05g00121 319 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Csa05g00121 319 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Csa05g00121 319 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Csa05g00121 319 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Csa05g00121 319 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Csa05g00121 319 Gene3D - 24 316 - -
Csa05g00121 319 Pfam short chain dehydrogenase 31 173 IPR002347 -
Csa05g00121 319 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 312 - -
Csa05g00121 319 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Csa05g00121 319 CDD retinol-DH_like_SDR_c_like 29 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00121 - - - csv:101213775 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00593 Csa-Chr4:3923424 Csa05g00121 Csa-Chr5:613328 7.49E-153 dispersed
Csa04g02361 Csa-Chr4:23990373 Csa05g00121 Csa-Chr5:613328 7.35E-29 dispersed
Csa05g00121 Csa-Chr5:613328 Csa05g00201 Csa-Chr5:1199745 8.25E-67 dispersed
Csa05g00120 Csa-Chr5:607480 Csa05g00121 Csa-Chr5:613328 5.31E-160 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g720 . Blo15g00173 . . . . . . . . Cma02g01074 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00121 . . . . . . . . . . . Cmo02g01090 Cmo15g01147 . . . . . Cpe13g00263 Bhi12g00032 . . . . . Lcy12g0040 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00121 Csa_Chr05 FPKM 8.037719 7.270778 33.168423 33.262268 79.523445 79.234634 80.803291 0.94852 0.461642 0.469732