Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00122 ATGGATGCAGGATCTTTGAATAGTTCTTCTTCTAAATCTAACAACACTCGCTTTCCCCTTCAAGAACAGCAACTTCAGAAAAAGCATTCCAAAGAAAATTTGGATAGGTTTATTCCGAATCGATCGGCTATGGATTTTGATTATGCGCATTATATGGTTACTGAGGGGATGAAAGGTAAGGAAAATCCTTCTGTCAGTTCGCCGTCTAAGGAAGCTTATCAGAAGCGGTTGGCTGAGACACTGAACATGAATCGAACTCGAATCCTTGCGTTCAAGAACAAACCTCCCGCACCAGTTGAGTTGATACCTAAGGAGTTCTTCTCCTCTGTTTCTCATGATAAACCCGTCAAGGCCCGTCGTCATATCCCTCAGACCTCTGAAAAGACATTGGATGCTCCTGATCTTGTTGATGATTACTACTTGAACTTATTGGATTGGGGCAGCACCAATGTGCTTGCTATAGCTCTTGGGAACTCTGTCTATTTGTGGAATGGACAAGATGGCTCTACTTCAGAACTTGTAACGGTTGATGACGAAGTTGGTCCTGTAACAAGTGTGAATTGGGCACCTGATGGAAGACATGTTGCTGTTGGATTGAACAATTCTGAAGTACAGCTTTGGGATTCACTATCGAATAGACAGCTAAGAACTTTGAGGGGTGGCCATAGGATGCGAGTGGGCTCACTGGCATGGAACAATCACATTCTCACAACTGGAGGAATGGACGGGAAGATCATTAACAATGATGTGAGAATTAGAGATCACATAGTGGAAACTTATAGAGGCCACGATCAAGAGGTTTGTGGGCTTAAATGGTCATTATCTGGACAACAATTAGCAAGTGGAGGAAATGACAATGTCCTCCATATCTGGGACAAAGCAACAGCATCTTCAAACTCAGCTACCCAATGGCTTCATAGGCTTGAGGATCATACTTCTGCAGTCAAGGCTCTTGCATGGTGTCCATTCCAAGGCAACTTGCTCGCATCTGGTGGAGGCAGTGGAGATCGTTCCATTAAGTTTTGGAACACCCACACTGGAGCATGTTTGAATTCTGTTGATACTGGCTCTCAAGTGTGTGCTCTACTATGGAATAAAAATGAGAGAGAACTGCTCAGCTCCCATGGGTTCGCTCAGAACCAGCTCACTCTTTGGAAATACCCTTCAATGGTGAAGATGGGAGAGCTCACTGGTCATACATCAAGAGTTCTCTTCATGGCTCAGAGTCCAGACGGGTGCACCGTGGCTTCAGCAGCAGCAGATGAAACATTGAGATTATGGCATGTTTTTGGAGCTCCTGAAGTAGCTAAACCTACTCCAAAATCCTATAATACAGAACCGTTTGCTCATATCAATCGTATTCGATAA 1368 44.15 MDAGSLNSSSSKSNNTRFPLQEQQLQKKHSKENLDRFIPNRSAMDFDYAHYMVTEGMKGKENPSVSSPSKEAYQKRLAETLNMNRTRILAFKNKPPAPVELIPKEFFSSVSHDKPVKARRHIPQTSEKTLDAPDLVDDYYLNLLDWGSTNVLAIALGNSVYLWNGQDGSTSELVTVDDEVGPVTSVNWAPDGRHVAVGLNNSEVQLWDSLSNRQLRTLRGGHRMRVGSLAWNNHILTTGGMDGKIINNDVRIRDHIVETYRGHDQEVCGLKWSLSGQQLASGGNDNVLHIWDKATASSNSATQWLHRLEDHTSAVKALAWCPFQGNLLASGGGSGDRSIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFAQNQLTLWKYPSMVKMGELTGHTSRVLFMAQSPDGCTVASAAADETLRLWHVFGAPEVAKPTPKSYNTEPFAHINRIR* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 617527 619981 - CsaV3_5G001220.1 Csa05g00122 528509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00122 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 217 IPR001680 GO:0005515
Csa05g00122 455 CDD WD40 158 427 - -
Csa05g00122 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 429 IPR001680 GO:0005515
Csa05g00122 455 Pfam Anaphase-promoting complex subunit 4 WD40 domain 175 233 IPR024977 -
Csa05g00122 455 MobiDBLite consensus disorder prediction 1 23 - -
Csa05g00122 455 SUPERFAMILY WD40 repeat-like 140 428 IPR036322 GO:0005515
Csa05g00122 455 Pfam WD domain, G-beta repeat 258 292 IPR001680 GO:0005515
Csa05g00122 455 Pfam WD domain, G-beta repeat 305 343 IPR001680 GO:0005515
Csa05g00122 455 Pfam WD domain, G-beta repeat 393 427 IPR001680 GO:0005515
Csa05g00122 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 301 IPR001680 GO:0005515
Csa05g00122 455 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 453 - -
Csa05g00122 455 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 453 IPR033010 GO:0010997|GO:0097027|GO:1904668
Csa05g00122 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 429 - -
Csa05g00122 455 SMART WD40_4 169 208 IPR001680 GO:0005515
Csa05g00122 455 SMART WD40_4 346 386 IPR001680 GO:0005515
Csa05g00122 455 SMART WD40_4 301 343 IPR001680 GO:0005515
Csa05g00122 455 SMART WD40_4 253 292 IPR001680 GO:0005515
Csa05g00122 455 SMART WD40_4 389 428 IPR001680 GO:0005515
Csa05g00122 455 SMART WD40_4 211 249 IPR001680 GO:0005515
Csa05g00122 455 Gene3D - 84 431 IPR015943 GO:0005515
Csa05g00122 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 208 - -
Csa05g00122 455 MobiDBLite consensus disorder prediction 1 34 - -
Csa05g00122 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00122 K03363 CDC20; cell division cycle 20, cofactor of APC complex - csv:101213539 921.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02935 Csa-Chr3:27969092 Csa05g00122 Csa-Chr5:617527 0 dispersed
Csa05g00122 Csa-Chr5:617527 Csa05g00338 Csa-Chr5:2158867 1.33E-111 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00122 Chy09g00982 . . . . . . . . . . . . . . . . . . Bhi12g00033 . . . . . . . . . . . . . . . . Cme09g01509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001497 1 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 1 2 1 2 3 4 2 2 5 3 6 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00122 Csa_Chr05 FPKM 7.973818 9.286987 5.432362 4.888567 20.809818 20.89727 21.345201 0.831951 0.613486 0.874363