Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00129 ATGCCGGAATCGGAAAGTGGAACGCCGGTAGCATCGGCGCCAGCGACGCCGGGGACGCCGGGAGGGCCGCTGTTTTCCGGGCTCCGAGTAGATTCTCTATCGTACGATCGGAAGTCAATGCCGCGGTGTAAGTGTTTGCCCGTGAATGCTCCCACGTGGGGCCAACCTCACACGTGCTTCACTGATTTCCCTGCTCCTGATGTCTCTCTCACTCGCAAGTTGGGAGCAGAATTTGTGGGGACATTCATCTTGATATTTGCTGCGACGGCAGGCCCCATTGTGAACCAAAAGTACAACGGCGTGGAAACTCTGATCGGAAACGCGGCATGCGCAGGGTTGGCGGTGATGATTGTAATTCTGTCAACAGGACACATTTCCGGTGCACACCTGAACCCATCACTCACCATTGCCTTTGCTGCCCTCCGCCACTTTCCTTGGGTTCAAGTCCCCGCCTACATTGCCGCCCAAGTCTCCGCCTCCATTTGCGCCTCCTTCGCTCTCAAAGGGGTTTTTCACCCTTTCATGTCTGGTGGTGTCACCGTCCCCTCCGTCAGTATTGGCCAAGCCTTTGCTCTTGAATTTATAATCACTTTCAATCTCCTCTTTGTTGTCACTGCGGTTGCCACTGACACTCGTGCGGTCGGAGAGTTAGCAGGAATTGCAGTCGGAGCTACAGTGATGCTTAACATTCTTGTAGCCGGGCCCTCAAGCGGTGGTTCGATGAACCCTGTTCGAACTTTGGGACCCGCCGTGGCTGCTGGAAATTACAAAGCATTGTGGGTTTATCTGGTGGCGCCGACGCTTGGGGCAATAATTGGGGCCGGGACTTACACCGCCGTCAAGCTGAGAGACGACGAAGTGGATGCTCCATCGCAGGTAAGGAGCTTCCGGCGTTGA 897 55.41 MPESESGTPVASAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGQPHTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYNGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSIGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYKALWVYLVAPTLGAIIGAGTYTAVKLRDDEVDAPSQVRSFRR* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 660752 665570 + CsaV3_5G001290.1 Csa05g00129 528516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00129 298 MobiDBLite consensus disorder prediction 1 24 - -
Csa05g00129 298 Gene3D Glycerol uptake facilitator protein. 64 292 IPR023271 -
Csa05g00129 298 PANTHER AQUAPORIN NIP5-1 ISOFORM X1-RELATED 9 296 - -
Csa05g00129 298 PANTHER AQUAPORIN NIP2-1 9 296 IPR034294 -
Csa05g00129 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Csa05g00129 298 SUPERFAMILY Aquaporin-like 69 286 IPR023271 -
Csa05g00129 298 Pfam Major intrinsic protein 68 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00129 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00129 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00129 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00129 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00129 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00129 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00205 Csa-Chr4:1203374 Csa05g00129 Csa-Chr5:660752 1.09E-120 dispersed
Csa05g00129 Csa-Chr5:660752 Csa06g03729 Csa-Chr6:29782797 2.53E-72 dispersed
Csa05g00129 Csa-Chr5:660752 Csa05g00130 Csa-Chr5:666923 2.68E-139 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00129 K09874 - csv:101212651 569.696