Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00130 ATGGCGTTCGAGTGTATACATGTAGACTCCCCAAAGCGAAGCCACACTCTTGATGTCTCTCTCACTCGAAAGGTGGCAGCCGAATTTGTGGGCACATTCATCTTGATATTTGGTGCAACAGCTGCACCCATCATCAACCAAAAGTACAACTCCCCCATGTCACTGATCGGAAACGCAGCATGTGCCGGCCTAGCTGTGATGATCGTAATTCTCTCAATAGGACACATCTCGGGTGCCCACCTGAACCCGTCGCTCACCATCGCTTTGGCCACCCTCCGCCACTTCGCTTGGGCCCATGTCCCTGCCTACATCACCGCCCAGGTCTCTGCTTCCATATGTGCCTCCTTCACTCTTAAAGGCGTTTTTCACCCTTTCATGTCTGGTGGTGTCACAGTTCCGTCCGTTGGTACCGGTCAAGCCTTTGCTCTTGAATTCCTCATTACCTTCAATCTCTTGTTTGTCGTCACTGCTGTTGCTACAGATACTCGAGCTGTTAGAGAGTTGGCCGGAATTGGAGTTGGAGCTACAGTGATGCTCAACATTCTTATTGCAGGGCCATCCACCGGTGGTTCGATGAACCCAGTGAGGACTTTAGGCCCTGCGGTCGCCGCTGGAAATTACAGAGAACTGTGGATATACATGGTGGCTCCTACACTTGGGGCCATCGTTGGCGCCGGAACCTACACCGCCGTGAAGCATAAAGATGATGGAATAGATGTTCTGCCGGAGGTGAGCAGTTTCCGTCGTTGA 750 52.13 MAFECIHVDSPKRSHTLDVSLTRKVAAEFVGTFILIFGATAAPIINQKYNSPMSLIGNAACAGLAVMIVILSIGHISGAHLNPSLTIALATLRHFAWAHVPAYITAQVSASICASFTLKGVFHPFMSGGVTVPSVGTGQAFALEFLITFNLLFVVTAVATDTRAVRELAGIGVGATVMLNILIAGPSTGGSMNPVRTLGPAVAAGNYRELWIYMVAPTLGAIVGAGTYTAVKHKDDGIDVLPEVSSFRR* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 666923 670019 + CsaV3_5G001300.1 Csa05g00130 528517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00130 249 Pfam Major intrinsic protein 19 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00130 249 SUPERFAMILY Aquaporin-like 18 233 IPR023271 -
Csa05g00130 249 PANTHER AQUAPORIN NIP2-1 15 237 IPR034294 -
Csa05g00130 249 PANTHER AQUAPORIN NIP5-1-RELATED 15 237 - -
Csa05g00130 249 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00130 249 PRINTS Major intrinsic protein family signature 62 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00130 249 PRINTS Major intrinsic protein family signature 99 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00130 249 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00130 249 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00130 249 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00130 249 ProSitePatterns MIP family signature. 80 88 IPR022357 -
Csa05g00130 249 Gene3D Glycerol uptake facilitator protein. 6 238 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00130 Csa-Chr5:666923 Csa06g03729 Csa-Chr6:29782797 1.71E-69 dispersed
Csa05g00129 Csa-Chr5:660752 Csa05g00130 Csa-Chr5:666923 2.68E-139 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00130 K09874 - csv:101212485 479.174