Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00130 | ATGGCGTTCGAGTGTATACATGTAGACTCCCCAAAGCGAAGCCACACTCTTGATGTCTCTCTCACTCGAAAGGTGGCAGCCGAATTTGTGGGCACATTCATCTTGATATTTGGTGCAACAGCTGCACCCATCATCAACCAAAAGTACAACTCCCCCATGTCACTGATCGGAAACGCAGCATGTGCCGGCCTAGCTGTGATGATCGTAATTCTCTCAATAGGACACATCTCGGGTGCCCACCTGAACCCGTCGCTCACCATCGCTTTGGCCACCCTCCGCCACTTCGCTTGGGCCCATGTCCCTGCCTACATCACCGCCCAGGTCTCTGCTTCCATATGTGCCTCCTTCACTCTTAAAGGCGTTTTTCACCCTTTCATGTCTGGTGGTGTCACAGTTCCGTCCGTTGGTACCGGTCAAGCCTTTGCTCTTGAATTCCTCATTACCTTCAATCTCTTGTTTGTCGTCACTGCTGTTGCTACAGATACTCGAGCTGTTAGAGAGTTGGCCGGAATTGGAGTTGGAGCTACAGTGATGCTCAACATTCTTATTGCAGGGCCATCCACCGGTGGTTCGATGAACCCAGTGAGGACTTTAGGCCCTGCGGTCGCCGCTGGAAATTACAGAGAACTGTGGATATACATGGTGGCTCCTACACTTGGGGCCATCGTTGGCGCCGGAACCTACACCGCCGTGAAGCATAAAGATGATGGAATAGATGTTCTGCCGGAGGTGAGCAGTTTCCGTCGTTGA | 750 | 52.13 | MAFECIHVDSPKRSHTLDVSLTRKVAAEFVGTFILIFGATAAPIINQKYNSPMSLIGNAACAGLAVMIVILSIGHISGAHLNPSLTIALATLRHFAWAHVPAYITAQVSASICASFTLKGVFHPFMSGGVTVPSVGTGQAFALEFLITFNLLFVVTAVATDTRAVRELAGIGVGATVMLNILIAGPSTGGSMNPVRTLGPAVAAGNYRELWIYMVAPTLGAIVGAGTYTAVKHKDDGIDVLPEVSSFRR* | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 666923 | 670019 | + | CsaV3_5G001300.1 | Csa05g00130 | 528517 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00130 | 249 | Pfam | Major intrinsic protein | 19 | 228 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00130 | 249 | SUPERFAMILY | Aquaporin-like | 18 | 233 | IPR023271 | - | |
Csa05g00130 | 249 | PANTHER | AQUAPORIN NIP2-1 | 15 | 237 | IPR034294 | - | |
Csa05g00130 | 249 | PANTHER | AQUAPORIN NIP5-1-RELATED | 15 | 237 | - | - | |
Csa05g00130 | 249 | PRINTS | Major intrinsic protein family signature | 23 | 42 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00130 | 249 | PRINTS | Major intrinsic protein family signature | 62 | 86 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00130 | 249 | PRINTS | Major intrinsic protein family signature | 99 | 118 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00130 | 249 | PRINTS | Major intrinsic protein family signature | 143 | 161 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00130 | 249 | PRINTS | Major intrinsic protein family signature | 174 | 196 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00130 | 249 | PRINTS | Major intrinsic protein family signature | 211 | 231 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00130 | 249 | ProSitePatterns | MIP family signature. | 80 | 88 | IPR022357 | - | |
Csa05g00130 | 249 | Gene3D | Glycerol uptake facilitator protein. | 6 | 238 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00130 | Csa-Chr5:666923 | Csa06g03729 | Csa-Chr6:29782797 | 1.71E-69 | dispersed | |
Csa05g00129 | Csa-Chr5:660752 | Csa05g00130 | Csa-Chr5:666923 | 2.68E-139 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00130 | K09874 | - | csv:101212485 | 479.174 |