Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00131 ATGGGTTTGCTCCGCTTCTTTAGAGTTAAGAGAAAATCCAAAGTTGCTGATAAAAAAACCATTCTCGATGCTCAAATTCAACAGAGTTTCTTTGCTACAAGGTTTCGTTGGACTGAGATCGAGTCTCTCACTAAGAATTTCTCCACTCTTGTCGGCTCCGGCGGCTTCAGCAACGTTTATCTTGCTCGGACGGCGCCGGGGATGGCCGCTGCCGTTAAGATTTTAGGCGCTAGCGAGCGGCTTAACCGAATGTTCCGGCAAGAATTGGACATTCTTCTCAAACTCCGTCATCGTAATATTGTCAATTTCGTTGGTTATTGTGATGAACGAGATGAAGGAGCTTTGGTATTCGAATATGTTCCAAATGGCAACTTACAAGAGAAGCTCCACCGACGGCCAGCGGCGTCGGTTCTTCCATGGAAAATCCGGCTACTCATAGCTTTTCAGTTAGCACAAGCAATCGAATACCTCCATGAGAAATGCAGTTTACAAATCGTTCACGGCGATATAAAATCATCAAACATCTTACTAGACGAGCAATTGAACTGCAAATTATGCGATTTCGGGTCTGCAAAAATGGGATTTTCGTCCGCGGTGGGGAACCCATCATCATCATCCTCGCCGTCTAGCCCATTCAGAGCAAAGCAATTGATGATGGGATCTCCAGGATATACAGATCCCCAATATCTAAGAACCGGAATCGCCTCAAAGAAAAACGATGTTTACAGCTTCGGCGTTGTTCTTTTAGAGCTAGTCACTGGGAAAGAAGCATTCTGTTCGGAGAAGGGTCAAATTCTGACATCAATTTTACCTCCGGCAGTTCGCGACGGGGGAGGAATTAAAGCGTCGGAGGTCTTGGAATTAGTTGATCCAAAACTCTGGGGGGAATTGGAGGTGGATGAAGCAGGGGCGTTGATAGGAATAGCGGCGGAGTGCGTGAGACAGCCGCCGGCACCGAGGCCGAGGATCGGAGAGGTGGTGGAGATGATGAGGGAAAAGATGGGGAGTGTTGGGGAGGTGAAACGTGGCAGTAAAGGATTGGATATGGGGAGATGGTAA 1059 47.59 MGLLRFFRVKRKSKVADKKTILDAQIQQSFFATRFRWTEIESLTKNFSTLVGSGGFSNVYLARTAPGMAAAVKILGASERLNRMFRQELDILLKLRHRNIVNFVGYCDERDEGALVFEYVPNGNLQEKLHRRPAASVLPWKIRLLIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDEQLNCKLCDFGSAKMGFSSAVGNPSSSSSPSSPFRAKQLMMGSPGYTDPQYLRTGIASKKNDVYSFGVVLLELVTGKEAFCSEKGQILTSILPPAVRDGGGIKASEVLELVDPKLWGELEVDEAGALIGIAAECVRQPPAPRPRIGEVVEMMREKMGSVGEVKRGSKGLDMGRW* 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 671247 673599 - CsaV3_5G001310.1 Csa05g00131 528518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00131 352 CDD STKc_IRAK 51 330 - -
Csa05g00131 352 SUPERFAMILY Protein kinase-like (PK-like) 28 330 IPR011009 -
Csa05g00131 352 SMART serkin_6 45 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00131 352 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Csa05g00131 352 ProSiteProfiles Protein kinase domain profile. 45 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00131 352 PANTHER BNAA02G22020D PROTEIN 18 340 - -
Csa05g00131 352 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 18 340 - -
Csa05g00131 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Csa05g00131 352 Gene3D Transferase(Phosphotransferase) domain 1 120 342 - -
Csa05g00131 352 Pfam Protein kinase domain 49 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00131 352 Gene3D Phosphorylase Kinase; domain 1 8 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00131 Csa-Chr5:671247 Csa07g02430 Csa-Chr7:22228678 2.88E-58 dispersed
Csa05g00131 Csa-Chr5:671247 Csa03g04110 Csa-Chr3:36012252 1.42E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78208 PF00069 Pkinase 2.80E-41 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00131 - - csv:101212406 677.937