Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00132 ATGGAACCACCCGCTCCTGGATCTGGATCAGGATTACCTGATCCATCTCAATTATTTAGAGTAGTTTCCACACCACCACCACCGCCGTCTTTAACTGTTGATACTACTATAAGTGATTCTCATCAAGTCGAAGCTGCTTCTCCGATTAGTAGCCGACCTCCTGCTGTACCATCTTCTTACGAGGAACTCATTCGTCTCAGCGGCGGCGGTGGTGGGGGTCAGATGGTGGTTGACGACGATGAAGCTGACGGCCGTAGCGGCGGCGGAAGTGGAGGAAGTGGTGGAAATCGGTGGCCGCGTCAGGAAACACTTGCTTTGCTTAAAATTAGGTCGGAGATGGATTCGGTATTTCGTGATGCTACACTTAAAGGTCCTCTTTGGGATGAAGTCTCCAGGAAGCTAGGGGAAATGGGGTACAAGAGAAATGCGAAGAAATGTAAAGAGAAATTCGAGAATGTTCAGAAATATTACAAACGCACAAAAGAAGGAAGAGGAGGGCGTCAAGATGGCAAGACTTACAAATTCTTTACGCAACTTGAGGCTCTTCACAACGCAAACGTGGCGCCTTCTTCTTCTAATTCATCATTCACACTGCCACACCCGCTTCCTGCAGCAGCAGCAGCAACAACCACCGTTGGCTTTGGGATTAGCAACCCAACTCCAATCTCATCCGTCAAAATTTCATCATCTTCTTCACAAACCCAAATGGGAATCTTTTCTACACCATCTGATCATTTCACTATCCGACCACCACCCGCCGTCGCTGCTCCTATGGGTGTTAGCTTTTCGTCGAACACCTCATCTGCATCCACCGAAGATGATGATGATGATAATGAAGATGAGGAGATGGGGTTTGATGTTGACCTTGAAGGGGAGCCGGAGAATGTAGCCGGAAGTAGTAGGAAGCGGCGGAGAGGGGTGATTAAAGGGAATAATGATGAATGGAGAAGTAGTAGTAGTAGCGGTGATCATAAGATGATGATGGAGTTTTTTGAGGGTTTGATGAAACAAGTGATGGAGAAACAAGAAGTTATGCAACAGAAGTTTTTGGAAGCGATTGAGAAAAGGGAACAGGATAGGATGGTTAGAGAAGAGAATTGGAAAAAAGAAGAGATGTTTAGGTTGAGTCAAGAACAAGAAAGAATGGCTCAAGAACGGACAATTTCTGCTTCTAGAGATGCTGCCATTATTGCTTTTCTTCAGAAATTTACTGGCCAAACCATTCAATTTTCAGCCCCAGCACCAGCCCCACAAGTGCCTCTGCCTGTACCTATGGCTGTGTCTGTACCTATGCCTACGCCTGTGCCAGCGCCACTATCTCCTGTCTCCTCTCATCAGCCAATGCAACCACAAACTCTGCCACACCTTCAGAATCAGCCGCCTTCAAATACAATCCCATTGGAACAATCAAAACCAAAATTTCAGGAAAATAGTCAAGGTGGAGATGGATCCTCAGAACCCATTTCCTCAAGATGGCCAAAGCAAGAAGTTTTAGCTCTAATAAAGCTGAGAGGTGGGCTTGAATCAAAGTATCAAGAAACAGGTCCAAAGGGTCCTCTGTGGGAAGAGATTTCAGCTGGAATGATAAAGATGGGTTACAAAAGAAGTTCTAAAAGATGCAAAGAGAAATGGGAAAATATCAATAAGTACTTCAAGAAAGTCAAAGAAAGCAACAAAAAACGCCGCGAGGATTCTAAAACTTGCCCTTATTTCAATGAACTTGATGCTCTTTATCGCAAAAAAATCCTTTCTACTACTGCTGCTGCTACTGCTTCTGATCATTCGGGTTCTTTTGAACAAAACCCAATTCAAAATATGGAAATTATTCCTCCATCAACAACTACAACAACAGATCATCATCTTCAATCTCAACCTCATTCTTCTTCCATTCCTCAAGGTTTATCCGCTACTCTTTTTGGTGAAGGAACTGAAGAACAACAACAACAACCAACATCCACGAAGCCAGAAGACATTGTGAACGAGTTGATGGAGCTGCAGGACGACGACGTCTATCGACGTCATCTCAACCAAGACGATGGCAACGACGAAAACAACGATGATTATTGCAGTGATGACGACGAAGACGACGAAGACGATTTACCAGAAGAAAAAAGAAACAGTAACATCGATTACAAAATAGAGTTTCAAAGACGAAACAATGTAGGAAACTCCAATGGTGTTGCAAGTGAGTTTCAATCAATGGCGGTGGTTCAATAG 2217 44.16 MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSHQVEAASPISSRPPAVPSSYEELIRLSGGGGGGQMVVDDDEADGRSGGGSGGSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSRKLGEMGYKRNAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNANVAPSSSNSSFTLPHPLPAAAAATTTVGFGISNPTPISSVKISSSSSQTQMGIFSTPSDHFTIRPPPAVAAPMGVSFSSNTSSASTEDDDDDNEDEEMGFDVDLEGEPENVAGSSRKRRRGVIKGNNDEWRSSSSSGDHKMMMEFFEGLMKQVMEKQEVMQQKFLEAIEKREQDRMVREENWKKEEMFRLSQEQERMAQERTISASRDAAIIAFLQKFTGQTIQFSAPAPAPQVPLPVPMAVSVPMPTPVPAPLSPVSSHQPMQPQTLPHLQNQPPSNTIPLEQSKPKFQENSQGGDGSSEPISSRWPKQEVLALIKLRGGLESKYQETGPKGPLWEEISAGMIKMGYKRSSKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFNELDALYRKKILSTTAAATASDHSGSFEQNPIQNMEIIPPSTTTTTDHHLQSQPHSSSIPQGLSATLFGEGTEEQQQQPTSTKPEDIVNELMELQDDDVYRRHLNQDDGNDENNDDYCSDDDEDDEDDLPEEKRNSNIDYKIEFQRRNNVGNSNGVASEFQSMAVVQ* 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 686982 690557 + CsaV3_5G001320.1 Csa05g00132 528519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00132 738 CDD GT1 96 161 - -
Csa05g00132 738 Pfam Myb/SANT-like DNA-binding domain 490 577 IPR044822 -
Csa05g00132 738 Pfam Myb/SANT-like DNA-binding domain 96 182 IPR044822 -
Csa05g00132 738 MobiDBLite consensus disorder prediction 444 491 - -
Csa05g00132 738 ProSiteProfiles Myb-like domain profile. 96 154 IPR001005 -
Csa05g00132 738 MobiDBLite consensus disorder prediction 33 47 - -
Csa05g00132 738 MobiDBLite consensus disorder prediction 257 322 - -
Csa05g00132 738 MobiDBLite consensus disorder prediction 270 289 - -
Csa05g00132 738 CDD GT1 490 555 - -
Csa05g00132 738 SMART sant 488 550 IPR001005 -
Csa05g00132 738 SMART sant 94 156 IPR001005 -
Csa05g00132 738 MobiDBLite consensus disorder prediction 674 738 - -
Csa05g00132 738 MobiDBLite consensus disorder prediction 682 701 - -
Csa05g00132 738 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 73 698 - -
Csa05g00132 738 MobiDBLite consensus disorder prediction 1 100 - -
Csa05g00132 738 MobiDBLite consensus disorder prediction 295 311 - -
Csa05g00132 738 ProSiteProfiles Myb-like domain profile. 484 548 IPR001005 -
Csa05g00132 738 MobiDBLite consensus disorder prediction 713 738 - -
Csa05g00132 738 MobiDBLite consensus disorder prediction 608 635 - -
Csa05g00132 738 MobiDBLite consensus disorder prediction 437 491 - -
Csa05g00132 738 Gene3D - 98 159 - -
Csa05g00132 738 Gene3D - 492 553 - -
Csa05g00132 738 PANTHER - 73 698 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00066 Csa-Chr1:378802 Csa05g00132 Csa-Chr5:686982 5.60E-10 dispersed
Csa01g03448 Csa-Chr1:31464933 Csa05g00132 Csa-Chr5:686982 1.06E-20 dispersed
Csa03g03064 Csa-Chr3:28871011 Csa05g00132 Csa-Chr5:686982 7.01E-06 dispersed
Csa05g00132 Csa-Chr5:686982 Csa05g02745 Csa-Chr5:28184757 1.03E-22 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31662 PF13837 Myb_DNA-bind_4 1.10E-21 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00132 - - csv:101212243 1301.19