Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00138 ATGGGCTCTCACAACTCCGGTGAAGACTGTCTCGGTTGGGCTGCAAGAGACTCATCTGGGTTTCTATCTCCTTACAAATTCAATCGTAGGGTTCCTGGAGATGATGATGTTTCAATTACAATAACACACTGCGGAGTTTGTTATGCAGATGTAGTGTGGACAAGAAATAAATTAGGAGATTCGAAATATCCTTTAGTGCCTGGACATGAGATTGCAGGAATCGTGAAAAATGTTGGTGCAAATGTTCAACGATTTAAAGTTGGAGATCATGTTGGGGTAGGAACTTATGTGAATTCTTGCAGACAATGCGAGTACTGTGAAGATTGCCAAGAAGTTAGTTGCACAAGTGGATGCACTCATACTTTTAATTCAATTGATGTTGACGGTACAGTTACAAAGGGAGGATACTCCAACTACATTGTTGTTCATGAGAGATATTGCTACAAAATACCTGACAATTATCCATTAGCTTCAGCTGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATTCTCCCATGATTCGGCATAATATGAATCAACCTGGTAAGTCTCTTGGAGTGATAGGCCTTGGTGGTCTCGGCCACTTAGCCGTGAAGTTTGGGAAGGCTTTTGGACTTAATGTGACAGTTTTTAGCACTAGCATATCCAAGAAAGAAGAAGCCCTTGGCGTTCTTGGAGCAGACAAGTTTGTTGTCTCATCTGACAACAAGCAAATGGAGTCCTTGTCCAAGTCCCTTGACTTTATTATCGATGCTGCATCTGGTGATCACCCATTTGATCCATACATGTCTACGTTGAAGACTGGTGGCGTTATGGTTCTGGTGGGGTTTCCTTCTCAAGTCAAGTTCAATCCTGCTAGCCTTATTTTGGGTATGAGAACCATTTCTGGTAGCGTGACTGGTGGCACTAAATTGACTCAAGAAATGATCGATTTCTGTGCCGCTCATGGAATATATCCAAACATAGAAGTGATTCCAATTCAGTATTCTAATGAAGCTATCGAAAGGGTAATGAAGAAGGATGTCAAGTACCGATTTGTTATTGATATCGAAGGTTCTCTGAAATGA 1068 41.39 MGSHNSGEDCLGWAARDSSGFLSPYKFNRRVPGDDDVSITITHCGVCYADVVWTRNKLGDSKYPLVPGHEIAGIVKNVGANVQRFKVGDHVGVGTYVNSCRQCEYCEDCQEVSCTSGCTHTFNSIDVDGTVTKGGYSNYIVVHERYCYKIPDNYPLASAAPLLCAGITVYSPMIRHNMNQPGKSLGVIGLGGLGHLAVKFGKAFGLNVTVFSTSISKKEEALGVLGADKFVVSSDNKQMESLSKSLDFIIDAASGDHPFDPYMSTLKTGGVMVLVGFPSQVKFNPASLILGMRTISGSVTGGTKLTQEMIDFCAAHGIYPNIEVIPIQYSNEAIERVMKKDVKYRFVIDIEGSLK* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 746059 749876 + CsaV3_5G001380.1 Csa05g00138 528525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00138 355 Pfam Zinc-binding dehydrogenase 192 313 IPR013149 -
Csa05g00138 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Csa05g00138 355 CDD CAD1 12 349 - -
Csa05g00138 355 Gene3D - 165 320 - -
Csa05g00138 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Csa05g00138 355 PANTHER - 7 354 - -
Csa05g00138 355 PANTHER ALDEHYDE REDUCTASE 7 354 - -
Csa05g00138 355 SUPERFAMILY GroES-like 17 183 IPR011032 -
Csa05g00138 355 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 185 212 IPR029752 -
Csa05g00138 355 Pfam Alcohol dehydrogenase GroES-like domain 35 150 IPR013154 -
Csa05g00138 355 SMART PKS_ER_names_mod 14 348 IPR020843 GO:0016491
Csa05g00138 355 Gene3D - 13 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01819 Csa-Chr3:13943841 Csa05g00138 Csa-Chr5:746059 3.94E-95 dispersed
Csa05g00138 Csa-Chr5:746059 Csa06g03097 Csa-Chr6:26534763 2.18E-117 dispersed
Csa05g00138 Csa-Chr5:746059 Csa07g00715 Csa-Chr7:5097058 3.85E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00138 K00083 - csv:101211438 719.153