Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00141 | ATGAATTTTGGAGTTAATACACTCCAAAATCACCATCTTCAACCTAGAAATAGGTTAGATTTGATCATGATGGAGCCTCCGGAGGCGGAGGAGGAAGCCGGTGGTGGTTCTAACAGCGGCAACGGCGGAAGAGGAGGAGGAGGAGAAGTTGTTGAGAGAGAACACATGTTTGACAAAGTGGTGACTCCAAGTGACGTAGGTAAATTGAATCGTCTCGTAATTCCAAAGCAGCACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTCTTAAACTTCGAAGATCGTAACGGAAAATCATGGCGATTTCGTTACTCCTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGTTGGAGTCGTTTCGTCAAGGAGAAACGCCTTGACGCTGGAGATATTGTCTCATTTCAACGTGGAATTGGTGAAATTGGAAGAGATCGTCTTTACATCGACTGGCGTCGTCGTCCTGAACTCCCCATCCACCACTATCCCATCACCACCGCCACCACTGCCATCCGACCAAGCATCGTCATACCAAGCGGCAGTGGTGCTACTGCCGCCTGGGGGCCATTAGTCTGGCAGCCCCTCGGCGTAACGACAGCTGGATACCATCATCAGCCAGCTGCCGTAACGCCGCGGGACCACGCACACTTGTCACGAAACAACAACAACAGTAACAACAATAACAACAATGGGAATGGTATGTGTTGTCCTTATGGATATGGGAGTAGTAGTGTTGAAACAACAAGTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAAATCATCAAGAAGAGTAATTGGTACTCCAAGATTAGGGGAGGATCAAGAATTGGAATTGGAAATGGATAGGAATTATAATAATTATCAGATGCAGCAAGAGTATTGTAGTAATGGTGGGGGTGGTGCTTCAATGGTGGTCCTTCAAGGAAATTATAGTATGGAAAATCATCATCATCATCATAAATTAAATAGTAATAACAATAATAATTATAGTGAAGAAGATACACCAGTGAAAAAATCAAGATTAAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGAATGTGATTTATTATTATCTACAAACCCCAAAACCACTACTTCTACCACTCAATTCCAATTGCCTTCTCCTTCAATTTACAAAGTATGA | 1200 | 43.25 | MNFGVNTLQNHHLQPRNRLDLIMMEPPEAEEEAGGGSNSGNGGRGGGGEVVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGIGEIGRDRLYIDWRRRPELPIHHYPITTATTAIRPSIVIPSGSGATAAWGPLVWQPLGVTTAGYHHQPAAVTPRDHAHLSRNNNNSNNNNNNGNGMCCPYGYGSSSVETTSSGLVYLRTELGGKSSRRVIGTPRLGEDQELELEMDRNYNNYQMQQEYCSNGGGGASMVVLQGNYSMENHHHHHKLNSNNNNNYSEEDTPVKKSRLRLFGVNMEMESPISSPSSDECDLLLSTNPKTTTSTTQFQLPSPSIYKV* | 400 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 765460 | 770215 | + | CsaV3_5G001410.1 | Csa05g00141 | 528528 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00141 | 399 | ProSiteProfiles | B3 DNA-binding domain profile. | 57 | 162 | IPR003340 | GO:0003677 | |
Csa05g00141 | 399 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 38 | 377 | - | - | |
Csa05g00141 | 399 | CDD | B3_DNA | 55 | 144 | IPR003340 | GO:0003677 | |
Csa05g00141 | 399 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 38 | 377 | IPR044800 | GO:0003700 | |
Csa05g00141 | 399 | MobiDBLite | consensus disorder prediction | 29 | 49 | - | - | |
Csa05g00141 | 399 | Pfam | B3 DNA binding domain | 57 | 161 | IPR003340 | GO:0003677 | |
Csa05g00141 | 399 | SUPERFAMILY | DNA-binding pseudobarrel domain | 54 | 163 | IPR015300 | - | |
Csa05g00141 | 399 | Gene3D | - | 50 | 170 | IPR015300 | - | |
Csa05g00141 | 399 | SMART | B3_2 | 57 | 162 | IPR003340 | GO:0003677 | |
Csa05g00141 | 399 | MobiDBLite | consensus disorder prediction | 377 | 399 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00141 | Csa-Chr5:765460 | Csa06g00841 | Csa-Chr6:6759884 | 6.74E-66 | dispersed | |
Csa01g00478 | Csa-Chr1:3027039 | Csa05g00141 | Csa-Chr5:765460 | 1.42E-12 | transposed | |
Csa01g01873 | Csa-Chr1:15745012 | Csa05g00141 | Csa-Chr5:765460 | 3.56E-27 | transposed | |
Csa03g03001 | Csa-Chr3:28558816 | Csa05g00141 | Csa-Chr5:765460 | 1.01E-12 | transposed | |
Csa05g02582 | Csa-Chr5:27134879 | Csa05g00141 | Csa-Chr5:765460 | 3.88E-47 | transposed | |
Csa06g03600 | Csa-Chr6:29074924 | Csa05g00141 | Csa-Chr5:765460 | 1.19E-13 | transposed | |
Csa04g00592 | Csa-Chr4:3908314 | Csa05g00141 | Csa-Chr5:765460 | 2.53E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31664 | PF02362 | B3 | 8.10E-29 | CL0405 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00141 | - | - | csv:101211271 | 696.041 |