Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00141 ATGAATTTTGGAGTTAATACACTCCAAAATCACCATCTTCAACCTAGAAATAGGTTAGATTTGATCATGATGGAGCCTCCGGAGGCGGAGGAGGAAGCCGGTGGTGGTTCTAACAGCGGCAACGGCGGAAGAGGAGGAGGAGGAGAAGTTGTTGAGAGAGAACACATGTTTGACAAAGTGGTGACTCCAAGTGACGTAGGTAAATTGAATCGTCTCGTAATTCCAAAGCAGCACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTCTTAAACTTCGAAGATCGTAACGGAAAATCATGGCGATTTCGTTACTCCTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGTTGGAGTCGTTTCGTCAAGGAGAAACGCCTTGACGCTGGAGATATTGTCTCATTTCAACGTGGAATTGGTGAAATTGGAAGAGATCGTCTTTACATCGACTGGCGTCGTCGTCCTGAACTCCCCATCCACCACTATCCCATCACCACCGCCACCACTGCCATCCGACCAAGCATCGTCATACCAAGCGGCAGTGGTGCTACTGCCGCCTGGGGGCCATTAGTCTGGCAGCCCCTCGGCGTAACGACAGCTGGATACCATCATCAGCCAGCTGCCGTAACGCCGCGGGACCACGCACACTTGTCACGAAACAACAACAACAGTAACAACAATAACAACAATGGGAATGGTATGTGTTGTCCTTATGGATATGGGAGTAGTAGTGTTGAAACAACAAGTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAAATCATCAAGAAGAGTAATTGGTACTCCAAGATTAGGGGAGGATCAAGAATTGGAATTGGAAATGGATAGGAATTATAATAATTATCAGATGCAGCAAGAGTATTGTAGTAATGGTGGGGGTGGTGCTTCAATGGTGGTCCTTCAAGGAAATTATAGTATGGAAAATCATCATCATCATCATAAATTAAATAGTAATAACAATAATAATTATAGTGAAGAAGATACACCAGTGAAAAAATCAAGATTAAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGAATGTGATTTATTATTATCTACAAACCCCAAAACCACTACTTCTACCACTCAATTCCAATTGCCTTCTCCTTCAATTTACAAAGTATGA 1200 43.25 MNFGVNTLQNHHLQPRNRLDLIMMEPPEAEEEAGGGSNSGNGGRGGGGEVVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGIGEIGRDRLYIDWRRRPELPIHHYPITTATTAIRPSIVIPSGSGATAAWGPLVWQPLGVTTAGYHHQPAAVTPRDHAHLSRNNNNSNNNNNNGNGMCCPYGYGSSSVETTSSGLVYLRTELGGKSSRRVIGTPRLGEDQELELEMDRNYNNYQMQQEYCSNGGGGASMVVLQGNYSMENHHHHHKLNSNNNNNYSEEDTPVKKSRLRLFGVNMEMESPISSPSSDECDLLLSTNPKTTTSTTQFQLPSPSIYKV* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 765460 770215 + CsaV3_5G001410.1 Csa05g00141 528528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00141 399 ProSiteProfiles B3 DNA-binding domain profile. 57 162 IPR003340 GO:0003677
Csa05g00141 399 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 38 377 - -
Csa05g00141 399 CDD B3_DNA 55 144 IPR003340 GO:0003677
Csa05g00141 399 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 377 IPR044800 GO:0003700
Csa05g00141 399 MobiDBLite consensus disorder prediction 29 49 - -
Csa05g00141 399 Pfam B3 DNA binding domain 57 161 IPR003340 GO:0003677
Csa05g00141 399 SUPERFAMILY DNA-binding pseudobarrel domain 54 163 IPR015300 -
Csa05g00141 399 Gene3D - 50 170 IPR015300 -
Csa05g00141 399 SMART B3_2 57 162 IPR003340 GO:0003677
Csa05g00141 399 MobiDBLite consensus disorder prediction 377 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00141 Csa-Chr5:765460 Csa06g00841 Csa-Chr6:6759884 6.74E-66 dispersed
Csa01g00478 Csa-Chr1:3027039 Csa05g00141 Csa-Chr5:765460 1.42E-12 transposed
Csa01g01873 Csa-Chr1:15745012 Csa05g00141 Csa-Chr5:765460 3.56E-27 transposed
Csa03g03001 Csa-Chr3:28558816 Csa05g00141 Csa-Chr5:765460 1.01E-12 transposed
Csa05g02582 Csa-Chr5:27134879 Csa05g00141 Csa-Chr5:765460 3.88E-47 transposed
Csa06g03600 Csa-Chr6:29074924 Csa05g00141 Csa-Chr5:765460 1.19E-13 transposed
Csa04g00592 Csa-Chr4:3908314 Csa05g00141 Csa-Chr5:765460 2.53E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31664 PF02362 B3 8.10E-29 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00141 - - csv:101211271 696.041