Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00144 ATGGCTACCGTACTTCATAGAACTACCTTGGGTTCTATCATTTATTCTTATTTCCTACGTTGTTTTGGAAATTCCCATAATCATAATAATAATCTTGATCTTCATCATCATCATCATCATCACAAAAGCTTCAATCATATCTTCTTCAATAACATGCCAAAGCCAAAGCCTTTGTCCTTGCAGACTGTTGAGCTTAAAGTCAGGATGTGTTGCACCGGTTGTGAACGGGTCGTTAAAGATGCGATCTACAAGCTTAGAGGTGTTGACTCGGTTGAGGTGGAGTTAGAGCTTGAGAAGGTGACGGTTATTGGGTATGTTGACCGAAACAAAGTACTAAAGGTGGTTCGAAGGGCCGGGAAGAGGGCGGAGTTTTGGCCATACCCAGAGCCACCATTGTACTTTACATCAGCAACCGATTACTTCAAAGATACAACTCGTGAATTCAAAGAGAGTTACAACTATTATAGACATGGATATAATGTTGGCGAGAAGCATGGAACGATTCCGATGTCTCATCGTGGTGATGACAAAGTGAGCAACATGTTCAATGATGATAATGTCAATGCTTGTCATGTCATGTAA 582 40.89 MATVLHRTTLGSIIYSYFLRCFGNSHNHNNNLDLHHHHHHHKSFNHIFFNNMPKPKPLSLQTVELKVRMCCTGCERVVKDAIYKLRGVDSVEVELELEKVTVIGYVDRNKVLKVVRRAGKRAEFWPYPEPPLYFTSATDYFKDTTREFKESYNYYRHGYNVGEKHGTIPMSHRGDDKVSNMFNDDNVNACHVM* 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 794218 796446 + CsaV3_5G001440.1 Csa05g00144 528531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00144 193 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 16 193 IPR045181 GO:0046872
Csa05g00144 193 Gene3D - 59 123 - -
Csa05g00144 193 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 44 16 193 - -
Csa05g00144 193 CDD HMA 64 123 IPR006121 GO:0046872
Csa05g00144 193 ProSiteProfiles Heavy-metal-associated domain profile. 69 124 IPR006121 GO:0046872
Csa05g00144 193 Pfam Heavy-metal-associated domain 66 120 IPR006121 GO:0046872
Csa05g00144 193 SUPERFAMILY HMA, heavy metal-associated domain 60 129 IPR036163 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00144 - - - csv:101210939 362.073
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01939 Csa-Chr3:15295601 Csa05g00144 Csa-Chr5:794218 2.63E-30 dispersed
Csa03g04691 Csa-Chr3:40752823 Csa05g00144 Csa-Chr5:794218 8.28E-22 dispersed
Csa04g02736 Csa-Chr4:26291655 Csa05g00144 Csa-Chr5:794218 4.32E-14 dispersed
Csa05g00144 Csa-Chr5:794218 Csa05g02677 Csa-Chr5:27696903 7.51E-31 dispersed
Csa05g00144 Csa-Chr5:794218 Csa07g00467 Csa-Chr7:3375934 1.47E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g278 . . . . . . Bma07g01048 . . . . . . Car15g01202 . . Cpe05g00759 . . . . . . . . . . . . . . . . . . . Csa05g00144 . . . Blo19g00129 Bda07g00162 Bda09g00627 Bpe08g00914 Bpe11g00382 . . . . . . . . . . . . . . . . . . Cla01g00127 Cam01g0129 Cec01g0130 Cco01g0131 Clacu01g0125 Cmu01g0127 Cre09g2378 Lsi09g00117 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007419 3 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00144 Csa_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0