Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00148 ATGTCCGCTTCCGGCCACACCAAGTTGCTTGTCACAGATCTCGCTGCCACTGTACAACAAGTTCCCTCAAGGTACGTCCGCCCAATCTCTGACCGTCCAAACTCCTCCGATGTCAGACCATCCAACACCTATTCTTTCTCTGTCATTGACCTTCACGCCCTCGACGGCCCCTCTCGCCCCGATGTCATTTACCAAATTCGCCGTGCTTGTGAACGCGACGGTTTCTTTCTGGTGAAAAACCATGGAGTGCCGGAGGAAATGATCAATGGAGTGATGCGTATAACGAGGGAGTTTTTCCGGTTGCCAGAAAGTGAGAGACTAAAGAGCTATTCCGATGACCCGACGAAGAAGACGAGGTTGTCCACGAGTTTCAATGTGAAGACAGAGAAGGTGGCAAATTGGAGAGATTTCTTGAGACTTCATTGTTACCCTCTTCATCTTTATGTCGATGAATGGCCCTCCAACCCTCCTTCCTTCAGAAAAGAAGTGGCTGAGTATTGTACTACTATGAGGCAATTGACCTTAAAGCTGCTAGAGGCCATTTCTGAGAGCTTGGGGCTGCCAAAGGACTCAATAGCAAACTCAATTGGAAGTCATGGCCAACATATGGCCTTGAACTACTATCCTCCATGTCCACAGCCAGATCTCACTTATGGCTTGCCATGCCACACTGACCCCAACCTCATCACTCTTCTCCTCCAAGACCAAGTCCCCGGCCTCCAAGTCCACCGCGACGGTGCTTGGGTCGCCCTCAACCCTATCCCTAACACCTTCATCATCAACATCGGTGACCAGATGCAGGTGCTGAGTAATGATAGATACAAGAGTGTACTTCATCGGGCTGTTGTGAACAATTCAACAGAGCGAATTTCGATACCGACGTTTTACTGTCCGTCGCCAGAGGCAATGATCGGGCCAGCAAAGGAGCTGATCCACGACGAACATCGACCTGCTTTTAGAAACTTTACTTATTCTGAATACTACCAGACTTTTTGGAGTGGAGAACTTGATACTCGAAGATGTTTAGATTTGTTTAGGATTTAA 1044 48.47 MSASGHTKLLVTDLAATVQQVPSRYVRPISDRPNSSDVRPSNTYSFSVIDLHALDGPSRPDVIYQIRRACERDGFFLVKNHGVPEEMINGVMRITREFFRLPESERLKSYSDDPTKKTRLSTSFNVKTEKVANWRDFLRLHCYPLHLYVDEWPSNPPSFRKEVAEYCTTMRQLTLKLLEAISESLGLPKDSIANSIGSHGQHMALNYYPPCPQPDLTYGLPCHTDPNLITLLLQDQVPGLQVHRDGAWVALNPIPNTFIINIGDQMQVLSNDRYKSVLHRAVVNNSTERISIPTFYCPSPEAMIGPAKELIHDEHRPAFRNFTYSEYYQTFWSGELDTRRCLDLFRI* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 825128 827971 + CsaV3_5G001480.1 Csa05g00148 528535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00148 347 Gene3D - 9 334 IPR027443 -
Csa05g00148 347 PANTHER PROTEIN DMR6-LIKE OXYGENASE 2-LIKE 6 337 - -
Csa05g00148 347 Pfam 2OG-Fe(II) oxygenase superfamily 201 298 IPR044861 -
Csa05g00148 347 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 6 337 - -
Csa05g00148 347 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 199 298 IPR005123 -
Csa05g00148 347 Pfam non-haem dioxygenase in morphine synthesis N-terminal 48 153 IPR026992 -
Csa05g00148 347 SUPERFAMILY Clavaminate synthase-like 16 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00148 K24028 DMR6, DLO; salicylic acid 3-hydroxylase [EC:1.14.11.-] - csv:101209949 719.539
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03345 Csa-Chr3:30321621 Csa05g00148 Csa-Chr5:825128 1.11E-83 dispersed
Csa04g00857 Csa-Chr4:6069374 Csa05g00148 Csa-Chr5:825128 3.14E-126 dispersed
Csa04g00964 Csa-Chr4:7353708 Csa05g00148 Csa-Chr5:825128 1.43E-79 dispersed
Csa05g00148 Csa-Chr5:825128 Csa07g01656 Csa-Chr7:17018114 2.42E-76 dispersed
Csa06g00356 Csa-Chr6:2887955 Csa05g00148 Csa-Chr5:825128 9.87E-62 dispersed
Csa05g00148 Csa-Chr5:825128 Csa03g03068 Csa-Chr3:28895524 1.70E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g273 . . Bda06g01122 . . . . Bma14g00091 . . . . . . . Cpe14g01023 . . . . . . . . Cla10g00077 Cam10g0075 Cec10g0077 Cco10g0081 Clacu10g0075 Cmu10g0921 Cre10g0338 Cone8ag0582 . . . . Csa05g00148 . Cme06g02383 Blo03g00791 . . . . . . . . . . . . . Car16g01165 . . . . . . . . . . . . . . . . Lsi09g00122 . . .
Vvi2g316 . . . . . Bpe07g00105 . . . . . . . . . . . Bhi11g00395 . . . . . . . . . . . . . . . . Cone9ag0787 Lsi07g01416 Csa05g00148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007284 0 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 3 2 1 1 1 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00148 Csa_Chr05 FPKM 2.136152 2.675987 1.047094 0.780352 9.053282 10.891522 9.937951 0.458748 0.329022 0.348246