Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00149 ATGATATATATTTTTACTCTAAATAGAATAGGATACTTTTCAAAAATAAAATACAAATTGCAAGAGTTTTTTTGGCATGTAATGTTTTCAGTGGTTATTGCTTTGGAAGCCATTAGCAATGAAATGTGTAAAAAGATAAATTTGGAAAAAGTCACCCGGCAAAAACCCAGCTTAAAAAACAGAACTTTATTTCATTTAATTTGCGGGGTTTATCCGAAAAGAATTGTGAGAGCTCTCTCGTGTTTGGTTTGCTTATCTATGGCGTCTTCCATCTCCACCTATCATCAACACCATCTTCTTTCTCCTTCATTTTCTTCCAAAATTTCTGCCAGTTCCAACCGTCTTTCCTCTCCATTTCTTACTTCATCTTCTTCTGGGTTGTCTTCAAAGTTCAATTTCTCTCTTCGGTTCCTCACCAATGGCCAATCTTCCTCCCTCATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTTTCAATGGCCCCTCCTAAAGCCAAGCCTGGTGGAAAAGCCAAGAAGGTAATTGGGATGATAAAGCTTGCTTTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTAGGCCCTGCTCTTGGTTCCAAGGGTGTTAATATTATGGCCTTCTGTAAGGATTACAATGCCAAGACAGCCGATAAGGCTGGCTATGTTATTCCAGTTGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGTTGAAGACTCCACCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGAGTTGAAAAAGGATCAAAAGATCCAAAGGGAGAAAAAGTGGGAAAGATAACCATTGAACAGTTGCGTACGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATAGCAGGTACAGCAGCCAATATGGGAATTGAGATTGACCCTCCTGTCCTTGAACCTAAAACGAAGGCGCTTGTGTAG 963 40.6 MIYIFTLNRIGYFSKIKYKLQEFFWHVMFSVVIALEAISNEMCKKINLEKVTRQKPSLKNRTLFHLICGVYPKRIVRALSCLVCLSMASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSLISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 828219 833961 - CsaV3_5G001490.1 Csa05g00149 528536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00149 320 PANTHER RIBOSOMAL PROTEIN L11 145 308 - -
Csa05g00149 320 Gene3D - 240 320 IPR036769 -
Csa05g00149 320 ProSitePatterns Ribosomal protein L11 signature. 294 308 IPR020785 GO:0003735|GO:0005840|GO:0006412
Csa05g00149 320 CDD Ribosomal_L11 177 307 IPR000911 GO:0003735|GO:0005840|GO:0006412
Csa05g00149 320 PANTHER 60S RIBOSOMAL PROTEIN L12 145 308 IPR000911 GO:0003735|GO:0005840|GO:0006412
Csa05g00149 320 TIGRFAM L11_bact: ribosomal protein uL11 171 308 IPR006519 GO:0003735|GO:0005840|GO:0006412
Csa05g00149 320 Hamap 50S ribosomal protein L11 [rplK]. 173 309 IPR000911 GO:0003735|GO:0005840|GO:0006412
Csa05g00149 320 Pfam Ribosomal protein L11, N-terminal domain 177 234 IPR020784 -
Csa05g00149 320 Gene3D - 170 239 IPR036796 -
Csa05g00149 320 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 167 252 IPR036796 -
Csa05g00149 320 SUPERFAMILY Ribosomal protein L11, C-terminal domain 235 308 IPR036769 -
Csa05g00149 320 SMART rl11c 177 308 IPR000911 GO:0003735|GO:0005840|GO:0006412
Csa05g00149 320 Pfam Ribosomal protein L11, RNA binding domain 239 307 IPR020783 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00149 K02867 RP-L11, MRPL11, rplK; large subunit ribosomal protein L11 - csv:101210200 403.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01315 Csa-Chr4:13509068 Csa05g00149 Csa-Chr5:828219 5.95E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g268 . . . . . . . . . . . Cma15g01332 . Car15g01197 . . . . . . . . . . . . . . . . . . . . . . Csa05g00149 Chy09g01346 . . . . . . . . . . . Cmo15g01394 . . . . . . Bhi12g00069 . . Lac11g1879 Hepe06g1420 . Lcy12g1498 Cla01g00132 Cam01g0134 Cec01g0135 Cco01g0136 Clacu01g0130 Cmu01g0132 Cre09g2373 Lsi09g00123 . . Cme09g01894
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012293 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00149 Csa_Chr05 FPKM 8.053835 8.752115 10.790973 8.537298 35.339092 30.605055 36.311024 12.216726 11.57076 13.06442