Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00162 ATGGAGGATGAGATGATTGATGATACTAATTCTCCAAGCTGGAAACTTTATGAAAACCCTTTTTATATTACCCCTTCTCATCATCATCATCACCGTCATCATCGTCATCAAACTTCTCATAAATCCTCCATTAACACCAACAACAACAACCAACTCCAATTTTATTGCTTGAAATTTTCTTCTTCTTCTTCTTCTGATCTATTTCCTACTAAAAGGCGAATGGATTCAGAGCTCGATCTCGCCCGAAGCCAGATCGTAGAGCTCAAGACCCAGCTTCGGTACGAACGCAAGGCTCGGAAAAAGCTCGAGTCTTTGACCAAGAGACTAGCTAAGGAACTTGATGAAGAGAGGAAACAAAGGGAAGCCATGGAAGGACTTTGTCAAGAACTTGCAAGAGAGATTTCTTCTCATGAAGCTCAGATGGATCTGATGAAGAAAGAGATCGAAGATGAGAGAAAGATGCTCAGGTTGGCTGAGGTTTTACGAGAAGAGAGAGTTCAAATGAAGCTTGCAGAGGTAAAAATTGTCTTCGAACATATGCTTTCAGAGATTGAATCAGGAACATCCACCACCACCAACAACACCACCACCACCACCACCGCCATTTTTCCAGACTTTTCTGCCAAACTAAAACACACGGTGGCCGACAACCCGTCTGTGAATTCGGACAACAACAATGCCGATGGCGACGATGACGAATCTTCGGTAAGAGAATCAATGAGATCATCGGACGCTATCGCGTGCAGAAAAACGGGGGATCGAAGAAGTATCTCGCCGGAGATGGAAAATAATAATCCTCACATTGTAAGAGGAATTAAAGGGTTTGTGGAATTCCGGCGAGTGGTTCGAACAAAAGGATCAAAATTAAGTAGAGATTCAGAGGCGAAATTGGAGTGTCAAAAAGCTCAGCTTAGAGTTCTTCTCAAACAAAAACATAGTCTCAGATCGGACAATCTCATTATTACCTAA 969 42.52 MEDEMIDDTNSPSWKLYENPFYITPSHHHHHRHHRHQTSHKSSINTNNNNQLQFYCLKFSSSSSSDLFPTKRRMDSELDLARSQIVELKTQLRYERKARKKLESLTKRLAKELDEERKQREAMEGLCQELAREISSHEAQMDLMKKEIEDERKMLRLAEVLREERVQMKLAEVKIVFEHMLSEIESGTSTTTNNTTTTTTAIFPDFSAKLKHTVADNPSVNSDNNNADGDDDESSVRESMRSSDAIACRKTGDRRSISPEMENNNPHIVRGIKGFVEFRRVVRTKGSKLSRDSEAKLECQKAQLRVLLKQKHSLRSDNLIIT* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 930043 932845 - CsaV3_5G001620.1 Csa05g00162 528549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00162 322 Coils Coil 71 91 - -
Csa05g00162 322 Coils Coil 95 154 - -
Csa05g00162 322 MobiDBLite consensus disorder prediction 215 266 - -
Csa05g00162 322 PANTHER PROTEIN BRANCHLESS TRICHOME 4 315 IPR040209 GO:0010091
Csa05g00162 322 MobiDBLite consensus disorder prediction 230 257 - -
Csa05g00162 322 PANTHER GB|AAF24581.1 4 315 IPR043424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00162 - - - csv:105435433 568.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00162 Csa-Chr5:930043 Csa07g01090 Csa-Chr7:10484949 2.38E-14 dispersed
Csa05g00162 Csa-Chr5:930043 Csa03g00504 Csa-Chr3:4195608 5.77E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g248 . . . . . . . . . . . Cma15g01316 Car02g00692 Car15g01184 . . Cpe05g00770 . . . . . . . . . . . . . . . . . . . Csa05g00162 Chy09g01335 . . Blo19g00136 . Bda09g00636 Bpe08g00904 . . . . . Cmo15g01381 . . . . . . Bhi12g00298 . . . . . Lcy12g1621 Cla01g00144 Cam01g0149 Cec01g0145 Cco01g0151 Clacu01g0144 Cmu01g0144 Cre09g2362 Lsi09g00135 . . Cme09g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011576 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00162 Csa_Chr05 FPKM 33.119953 32.571659 36.233681 28.310194 29.652533 30.395958 26.965403 47.151531 49.01086 46.130798