Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00167 ATGTCATCTCTGTCCGGAACTTGGGCAGCATTACCGGCGGGGCCCTCCTCCGATCAGATTGATATACAAATTCAAGATGATGGCATCATCAGGATTCTTAATAATAATCACAGCCGTTCCTCACCCATCTCCAATATTCCGATTCCTTCTCATTCCCCACCAATGGCGAGAGCCTTCTTAGGTTCCACGCCTTCCTCTTCCCCACTAATCGCTTTACGCCTCTCTTCCTTTACCCCATCATTTTTTTTAACCAATCAACGCCCTCGCTCCCTTCGTCTCACCACCGACACTGTCGTCCCTATGGCGGAGCTTCCGTCGGAGAAGCGCATTAAGCCCCACCCATCTCTCGAGGTCATCGGTGGAGGCTGCGATCAGTTCCTCCCAGCTTTTAAGGACTTGGATCTCCCCTATAAGCCTTTCCCTGTAATTGGGTCGAATCGCCATTTGGAGACCATTTTTGCTTCCTTTTTTAGGACTTGTCCCAGTGTTAACCTCCACCGGGAGTGTCTTCGTGCGGCTGATAATGGGACTGTTGCGCTCGATTGGGTCGCCGGTGACGATCTCCGTTTGCCTCTTGATTCTCCTGTTCTTATTCTTCTGCCTGGTTTAACAGGAGGGAGTCAGGATTCATATGTAAGACACATGTTGGTTAGAGCTAGAGATCGTGGGTGGAGGGTTGTGGTTTTCAACAGCCGTGGATGTGGGAATAGCCCTGTTACCACTCCTCAGTTCTATTCGGCTTCATTTTTAGGAGATATGCGTGAAGTAGTTGCGCATGTTACTGAAAGATATCCCAAGGCTAATTTGTATGCTGTTGGCTGGTCACTTGGTGGTAACATTCTTGTTAATTATTTGGGACAGGATTCCCTGACCTGTCCATTGTCTGGTGCTGTGTCTTTATGTAATCCATTCGATCTAATAGTTGCAGATGAGGACTTTCGGAAGGGCTTCAACAACGTCTATGATAAATCCCTGGCTGGAGCGTTACGTAAAATTTTCAACAAGCATGCTGCTCTCTTCACTGATATGACTGGTGAATTCAATATTCGCTTGGCTGCCAAAGCTACAACTGTTAGAGACTATGATGATGCCTTAACACGCGTTTCATTTGGTTTCAACACTGTGGATGAATACTACTCAAAGTCTAGCAGTTCAAAATTCATAAAAGATGTCAAAATTCCTTTGCTTTGCATCCAGGCAGCAAATGATCCAATTGCTCCAAATAGAGGAATCCCCCGAGAAGATATAGAGGAAAATCCAAATTGTATGTTAATAGTAACACCCAAAGGTGGGCATCTAGGGTGGGTTGCAGGGCCCGGTGCTCCCCTCGGTTTTCCATGGACTGATCCATTCGTGATCGATTTCCTCATGTATTTGGAAAATAAAAAATTCAAAGCCTCAGCATCTTCTACAGATTTAACAATGGCAGAGGTAATGACATAG 1443 46.02 MSSLSGTWAALPAGPSSDQIDIQIQDDGIIRILNNNHSRSSPISNIPIPSHSPPMARAFLGSTPSSSPLIALRLSSFTPSFFLTNQRPRSLRLTTDTVVPMAELPSEKRIKPHPSLEVIGGGCDQFLPAFKDLDLPYKPFPVIGSNRHLETIFASFFRTCPSVNLHRECLRAADNGTVALDWVAGDDLRLPLDSPVLILLPGLTGGSQDSYVRHMLVRARDRGWRVVVFNSRGCGNSPVTTPQFYSASFLGDMREVVAHVTERYPKANLYAVGWSLGGNILVNYLGQDSLTCPLSGAVSLCNPFDLIVADEDFRKGFNNVYDKSLAGALRKIFNKHAALFTDMTGEFNIRLAAKATTVRDYDDALTRVSFGFNTVDEYYSKSSSSKFIKDVKIPLLCIQAANDPIAPNRGIPREDIEENPNCMLIVTPKGGHLGWVAGPGAPLGFPWTDPFVIDFLMYLENKKFKASASSTDLTMAEVMT* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 973367 978112 - CsaV3_5G001670.1 Csa05g00167 528554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00167 480 Pfam alpha/beta hydrolase fold 195 433 IPR000073 -
Csa05g00167 480 Gene3D alpha/beta hydrolase 184 437 IPR029058 -
Csa05g00167 480 PANTHER ABHYDROLASE DOMAIN-CONTAINING PROTEIN 103 465 - -
Csa05g00167 480 SUPERFAMILY alpha/beta-Hydrolases 160 442 IPR029058 -
Csa05g00167 480 ProSitePatterns Uncharacterized protein family UPF0017 signature. 362 403 IPR000952 -
Csa05g00167 480 PANTHER EMBRYOGENESIS-ASSOCIATED PROTEIN EMB8-LIKE 103 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00167 - - - csv:101222809 924.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00167 Csa-Chr5:973367 Csa05g02163 Csa-Chr5:24653679 7.27E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g237 . . . . . . . . . . Cma02g00942 . Car02g00690 . . . Cpe05g00772 . . . . . . . . . . . . . . Cone8ag0597 Cone12ag0591 . . . Csa05g00167 Chy09g01331 . . . . Bda09g00645 Bpe08g00896 . . . . . . . . . . . . Bhi12g00089 . . Lac11g1928 Hepe06g1439 . Lcy12g1523 Cla01g00148 Cam01g0153 Cec01g0149 Cco01g0155 Clacu01g0148 Cmu01g0148 Cre09g2358 Lsi09g00139 . . Cme09g01879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010186 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00167 Csa_Chr05 FPKM 27.757738 29.916632 10.369863 9.782667 14.086545 10.908555 14.81589 11.790946 12.804493 15.16473