Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00169 ATGGCGGCGGAGATTGCGAAGGAGCCGATCGAGGGCAATCGGACGACCATCGTCGAAGATGGTGGTGAATTGGGGAAGAACGTGAGATGGAAGAAGCTTCAACCATGGACGAGGCAATTAACGGTTAGAGGGGTAACAGTGAGCGTCATTATTGGAAGTGTTTATAGTGTGATAGTGATGAAACTAAACCTGACCACGGGACTTGTCCCAAATCTCAATGTCTCTGCCGCTCTTCTTGCATTTGTTTTTGTTCGGACGTGGACTAAAGCACTGCAAAAAGCTGGGTTTGTAACTAAACCCTTCACTCGTCAAGAGAACACCATGATCCAGACTTGCGCTGTTGCTTGTTACAGTATTGCAGTTGGAGGTGGATTTGCTTCATATTTACTGGGGATGAACAGAAAAACATATGAGTTATCGGGAATAAACACAGAAGGAAATTCTTCGTACAGTGTGAAAGAGCCAGGATTGGGGTGGATGACTGCATTTCTTTTTGTTGTTTGCTTTGTGGGTCTTTTTGTTTTGATTCCTCTTAGAAAGGTTATGATAGTGGACCTTCAATTGACATATCCTAGTGGCATGGCGACAGCGGTACTCATCAATGGCTTTCACACTCAGGGTGATGACATGGCAAAAAAGCAAGTTAAAGGGTTTATGAAGTACTTTTCATTTAGCTTCTTATGGGGTTTATTCAAATGGTTCTTTAAAGGCAAAGAAAAGTGTGGTTTCTCTGAGTTTCCCACTTTTGGACTTAAAGCTTGGAACCAAACATTCTTCTTCGATTTTGACTCGACTTTTGTGGGAGCAGGGATGATTTGTTCCCACTTAGTGAATTTGTCTTTACTTCTAGGAGCCATCTTATCTTATGGCTTAATGTGGCCTCTTCTTGATCGACTCAAAGGTCAATGGTACCCTGAAAGCTTAGAAGAAAGTGACATGAAGAGTTTATATGGATACAAGGTTTTTTTATCTGTTGCTCTAATTCTAGGAGATGGACTTTACAACTTTATCAAGATTCTTGGTTCAACAATCTTAAATGTACGCGATAGAGTCAAGAAAGCAAAAGCAGGTTTAGATGACAATGAGAAAACAGAAATGGATGAAAAGAAAGACGAAATGTTCTTAAGAGAAAGTATCCCGTTATGGGTGGGACTCATTGGTTACACAACCTTGGCTACAATTTCCACCATTGTTATCCCACAAATGTTCCCTCAACTCAAATGGTACTTTGTCATTATTGCCTACGTCCTTGCCCCCGCCCTTGCCTTCTGTAATGCTTATGGGGCCGGTCTCACCGACATCAACATGGCCTACAACTATGGCAAGGTTGCTCTCTTTCTTCTAGCTGCCCTCAGCCCAAAACACGATGCCCTCATCGCAGGTCTTGCTGGTTGCGGTCTCATAAAGTCGGTCGTCTCAGTTGCATGCATTCTCATGCAAGATTTCAAAACAGCCCACTTGACCTCCACTTCCCCTAGAGCAATGTTTGTAAGCCAAATGATCGGCACGGCAGTCGGGTGTGTCACAGCGCCATTAAGCTTCTTCTTATTCTACAAGGCATTCGACGTGGGAAATCCTAAAGGGGAATTCAAGGCGCCATATGCCTTGATATATAGGAACATGGCGATTCTCGGAGTTGAGGGAGTCTCGGCTTTACCGAAGCACTGCTTGCAGATATGTTACGGGTTTTTCGGGTTCGCAATCGGGGTGAATCTAGTGAAGGATTTTGGAGGTAGGAGGATAGGGAAATTGATGCCATTGCCAATGGTAATGGCAGTGCCATTTTTGGTTGGGGGGTATTTCGCTATTGATATGTGTTTGGGGAGTTTGATTGTGTTTGTTTGGGGGAAAATGAATAGGGAGAAGGCTGAGATGATGTTGCCGGCGGTGGCATCTGGCTTGATTTGTGGGGAAGGTCTTTGGACTTTACCGGCTTCTGTTCTTGCTCTTGCCAAGATTAATCCTCCCATTTGTATGAAGTTTGTCCCTTCATAG 1995 43.96 MAAEIAKEPIEGNRTTIVEDGGELGKNVRWKKLQPWTRQLTVRGVTVSVIIGSVYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWTKALQKAGFVTKPFTRQENTMIQTCAVACYSIAVGGGFASYLLGMNRKTYELSGINTEGNSSYSVKEPGLGWMTAFLFVVCFVGLFVLIPLRKVMIVDLQLTYPSGMATAVLINGFHTQGDDMAKKQVKGFMKYFSFSFLWGLFKWFFKGKEKCGFSEFPTFGLKAWNQTFFFDFDSTFVGAGMICSHLVNLSLLLGAILSYGLMWPLLDRLKGQWYPESLEESDMKSLYGYKVFLSVALILGDGLYNFIKILGSTILNVRDRVKKAKAGLDDNEKTEMDEKKDEMFLRESIPLWVGLIGYTTLATISTIVIPQMFPQLKWYFVIIAYVLAPALAFCNAYGAGLTDINMAYNYGKVALFLLAALSPKHDALIAGLAGCGLIKSVVSVACILMQDFKTAHLTSTSPRAMFVSQMIGTAVGCVTAPLSFFLFYKAFDVGNPKGEFKAPYALIYRNMAILGVEGVSALPKHCLQICYGFFGFAIGVNLVKDFGGRRIGKLMPLPMVMAVPFLVGGYFAIDMCLGSLIVFVWGKMNREKAEMMLPAVASGLICGEGLWTLPASVLALAKINPPICMKFVPS* 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 980408 984045 - CsaV3_5G001690.1 Csa05g00169 528556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00169 664 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 34 647 IPR004813 GO:0035673
Csa05g00169 664 Pfam OPT oligopeptide transporter protein 39 648 IPR004813 GO:0035673
Csa05g00169 664 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 27 663 IPR045035 GO:0035673
Csa05g00169 664 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL1 27 663 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00169 - - - csv:101202776 1298.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01963 Csa-Chr3:15512531 Csa05g00169 Csa-Chr5:980408 0 dispersed
Csa05g00169 Csa-Chr5:980408 Csa05g00170 Csa-Chr5:987784 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g232 . . . . . . . Bma14g00105 . . Cma02g00941 . Car02g00689 . . . Cpe05g00773 . . . . . . . . . . . . . . . . . . . Csa05g00169 Chy09g01329 . . . Bda07g01951 . . . . . . Cmo02g00950 . . . . . . . Bhi12g00091 . . Lac11g1930 Hepe06g1441 . . Cla01g00150 Cam01g0155 Cec01g0151 Cco01g0157 Clacu01g0150 Cmu01g0150 Cre09g2356 Lsi09g00141 . . Cme09g01876
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000598 4 9 3 3 2 3 3 3 3 4 3 3 3 4 4 3 3 3 3 3 4 2 2 2 2 4 2 4 10 3 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00169 Csa_Chr05 FPKM 47.272579 51.522446 27.806692 28.505405 25.26367 22.187326 26.038727 8.93864 9.712863 10.039717