Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00176 ATGTGGCTTCTGAGGCCTTTTCTGAACACCTTTCTCCTTTGGTCGTCCTTATCTGACTCTTTGCTCTTTCCAGTAACTGGGTTTTCTTCTCTCTTTAACTTCTTTCTTTTTCTCTTTCGTCTGTCTTTCTCCGTTACGTTGAGTTGCGGTTCGGATTTGATCATGTCTGGGAATTCTGAGGCTGATGATCGTGGGATTGTCGAGAAGGATCCATCTGGACGATATATACGGTATGATGAGATATTGGGTAAAGGGGCATTCAAGACAGTTTACAAAGCATTCGATGAAGTTGGTGGAATCGAAGTTGCTTGGAGTCAGGTGGACATTGAAGATGTCTTGCAGTCCCCAGAGCAACTCCAAAGATTATATTCTGAGGTCCATCTGTTGAAGTCACTGAAACATGAAAATATCATCAAGTTCTATAGCTATTGGGTTGATGATAAACATAAGACTATCAACATGATTACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCATAGGAAAGTTGACTTGAAGGCCTTCAAGAACTGGGCAAGGCAGATACTGCGAGGTTTAACGTATTTGCATGGTCACAACCCTCCAATCATTCACAGGGATTTGAAATGTGATAATATATTTGTCAATGGAAATACTGGAGAAGTTAAAATTGGAGATCTCGGATTGGCAATTGTCATGCAGCAGCCTACTGCTCGAAGTGTAATTGGCACTCCAGAGTTCATGGCTCCAGAACTTTATGATGAGGACTATAATGAACTTGTTGACATATATTCTTTTGGCATGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCAGGTATAAAGCCGGCTTCCCTTGAGAAAGTACTGGATCCTCAAGTTAAGCAATTTATTGAGAAGTGCCTGGTTCCTGCATCCACGAGATTACCTGCTAGTGAACTCTTGAAAGATCCTTTCCTTGCGGCTGAAAGTCCTAAGGACAATAGCTCTGAACTTTCAAGGTCATTGAATGAGCATTTCAAATCTGTGAATCCTCCACTGCTTGGTTCTCATCCAATGGAAACAGACCATAACTGCACCAAGCTCTCAGGTTCAGTGGCCTCATCTGTCAAAAGCAATAATGGAATTTCTCACTTTTCAACTCAAGAACTTCAGAGGCTCACTGAAAATAATGAATTGACACTGAAAGGAGACATGACTGATCATAATACGATGTCATTTCATTTGCGTATTGCTGAACTATATGGTAAATCTAGGAATATTCATTTTGCCTTCTATCTCGACTCTGATACTTCTTTGGCAATTGCTTTGGAGATGGTTGAACAACTTGAACTGTCGAATGAAGATGCGACTATCATAGCAAAGCTAATTGATGAGTTAATTGCTAAGTTTGTTCCTAGCTGGAAACCATGTCCAAACTATTGTGAAGAACAACAACAAAATACTCCTCATAGTCCTGAAGCTCAAGAGGATAAGACCTTTATTTCTCCTTTCTTCTCTGAGCTGGTACTGTCATCTCCCATGGTGGCTGCTGCAAGGAATAATCTGACAGGTTTGGCAAAGGTCGAAGATCAAGAAAACCAGCAGTCGATTATTTCGTGTGCTTCCGTGGAATACATTTACTCAACTGTCTCAGACTACAGCATAGGAAAAGGATCAGAGTGTGGTGAGTTTGGTCACCCTGATTGTGAAAAAGCTTATATTAGCAGTGGAACAATTGATTTAGATGCAGAAGCTGTTGGATCTCTTTCGACGACAATTGATTTTGCAAAACCGTCACTAATCTCTTCCTGCTCAGAAATGTCGAAAGAATTGAGTTTGTCTAGCTTTTCAACTCTTTCTATGGAAGAAAGAGATCACCAAGATGAACTGAAGATGGAGATTGATGCTATTGATTTGCAGTATCATCAGTGCCTTTGTGAACTGTCAAGAATGAGAGAGGAAGCAATAGAAAGTGCTAAGAAGAGGTGGATGTCTAAGAAGAAAGCTACGGGTATTTGA 2040 40.29 MWLLRPFLNTFLLWSSLSDSLLFPVTGFSSLFNFFLFLFRLSFSVTLSCGSDLIMSGNSEADDRGIVEKDPSGRYIRYDEILGKGAFKTVYKAFDEVGGIEVAWSQVDIEDVLQSPEQLQRLYSEVHLLKSLKHENIIKFYSYWVDDKHKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARQILRGLTYLHGHNPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEDYNELVDIYSFGMCMLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQFIEKCLVPASTRLPASELLKDPFLAAESPKDNSSELSRSLNEHFKSVNPPLLGSHPMETDHNCTKLSGSVASSVKSNNGISHFSTQELQRLTENNELTLKGDMTDHNTMSFHLRIAELYGKSRNIHFAFYLDSDTSLAIALEMVEQLELSNEDATIIAKLIDELIAKFVPSWKPCPNYCEEQQQNTPHSPEAQEDKTFISPFFSELVLSSPMVAAARNNLTGLAKVEDQENQQSIISCASVEYIYSTVSDYSIGKGSECGEFGHPDCEKAYISSGTIDLDAEAVGSLSTTIDFAKPSLISSCSEMSKELSLSSFSTLSMEERDHQDELKMEIDAIDLQYHQCLCELSRMREEAIESAKKRWMSKKKATGI* 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1012906 1016984 - CsaV3_5G001760.1 Csa05g00176 528563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00176 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Csa05g00176 679 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 428 475 IPR024678 GO:0004674|GO:0005524
Csa05g00176 679 CDD STKc_WNK 74 333 - -
Csa05g00176 679 Pfam Protein kinase domain 79 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00176 679 SMART serkin_6 76 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00176 679 Gene3D Transferase(Phosphotransferase) domain 1 159 340 - -
Csa05g00176 679 Gene3D - 416 511 - -
Csa05g00176 679 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 58 674 - -
Csa05g00176 679 ProSiteProfiles Protein kinase domain profile. 76 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00176 679 PANTHER WNK KINASE 58 674 - -
Csa05g00176 679 SUPERFAMILY Protein kinase-like (PK-like) 78 334 IPR011009 -
Csa05g00176 679 Gene3D Phosphorylase Kinase; domain 1 59 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00786 Csa-Chr3:6838790 Csa05g00176 Csa-Chr5:1012906 0 dispersed
Csa05g00176 Csa-Chr5:1012906 Csa07g01167 Csa-Chr7:11442874 2.93E-154 dispersed
Csa05g00176 Csa-Chr5:1012906 Csa03g00442 Csa-Chr3:3747292 9.57E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78209 PF00069 Pkinase 2.80E-51 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00176 K08867 - csv:101207748 1334.32