Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00178 ATGTCCATACTTCCTAGTGCCAAATTTGCAGATTTAAGCCCCACAAAAGATGTTTTTGTTTCAGCCCTCGGCTTTGCTTTGTCAATTAACAGTCCATGTGCCCCATTTGGAGATGAACTTCAAAGATCTGCTCAGGAACAAGTTGACTACATGTTAAGGGCAGACGCCGACACGTCATTGGTAATAAAGGACGATGAAGTAAAATCCGTGTTGAAGACAGGACTTTTTAGAACTTGTAGATCATTTGAGAGGGAGCTATCTTCCCTACTTTTGGAGCCTGACCTTGCATCTCAAGCCAAAGAAGACAAAATACTGAGGACATTATCTGATCTTGAATGGATATGTTCTTTACTTCCAAAGATGAACTTAATGAAAGACTTCGTTTACAACTGGATCGAGATATCTGGGAACATTCTGAAGGTAATCGAAGACGAAAAGTTGAATTCTTTAATGTGGGGTTTGAAACTTAAGTTGATTGAGATGACCAACAAAGCCTTGGAAGCTGTTGGCTATGGCACCGTAATTCTTCCTGCGCCATACCGCTTGTCACTACTTAAATTCTGGCTTCCATATATCAGGAAGATGAAGCCTCTACTAGATTCGAAGTGCATTGCAGAGACAGATTTTCGTTACAAGATGGACGAAGAACTGTGCATGAACATTGAGGGGGCAATTGTTTCTATGGTATTGGCATTGCCTTCAAATGATCAAGCAGGTATCTTGGCAGACTGGATGAAAGCTGAGGAAATACAATATCCTGATTTAACAGATGCTTTTGAATTATGGTGTTATAGGACCAAATCTGCAAAGCGGAGATTGATTGAAGGTTTTGACGGAGCTTGCTCTGACAACAGTGATGATGGTACAATCAGCTTTTAA 879 40.61 MSILPSAKFADLSPTKDVFVSALGFALSINSPCAPFGDELQRSAQEQVDYMLRADADTSLVIKDDEVKSVLKTGLFRTCRSFERELSSLLLEPDLASQAKEDKILRTLSDLEWICSLLPKMNLMKDFVYNWIEISGNILKVIEDEKLNSLMWGLKLKLIEMTNKALEAVGYGTVILPAPYRLSLLKFWLPYIRKMKPLLDSKCIAETDFRYKMDEELCMNIEGAIVSMVLALPSNDQAGILADWMKAEEIQYPDLTDAFELWCYRTKSAKRRLIEGFDGACSDNSDDGTISF* 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1024935 1028044 + CsaV3_5G001780.1 Csa05g00178 528565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00178 292 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 1 282 IPR038920 -
Csa05g00178 292 PANTHER BTB/POZ DOMAIN PROTEIN 1 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00178 - - - csv:101204227 569.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01149 Csa-Chr4:9800161 Csa05g00178 Csa-Chr5:1024935 1.99E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g211 . . . . . . . . . . . Cma15g01307 . Car15g01177 . . . . . . . . . . . . . . . . . . . . . . Csa05g00178 Chy09g01318 . . . . . . . . . . . Cmo15g01374 . . . . . . Bhi12g00101 . . Lac11g1944 Hepe06g1449 . Lcy12g1539 Cla01g00158 Cam01g0164 Cec01g0161 Cco01g0165 Clacu01g0160 Cmu01g0159 Cre09g2347 Lsi09g00150 . . Cme09g01867
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012900 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00178 Csa_Chr05 FPKM 4.718667 3.598227 7.325036 6.541666 17.583014 18.957954 16.338854 0.0 0.080689 0.0