Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00179 ATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGTCCAAAACCAAGTGTTTCAATTTTAGAGAGAAAAATTAGACCACAGAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAAGCAATACAAAGTTTTGTTATTACAATAATTATAGTCTCACACAACCAAGATACTTTTGCAAAACTTGCAGAAGGTATTGGACTGAAGGTGGATCTTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGAAAAAACAAAAGACCTTCTTCTAATTCTTCATCATCTACATCTCCCACACCACCTAATTCTTCTTCTCAATCTCAACCTAATTTCCCCAAGAAAATTCTTGATCATCAGCTCCCTCAAAACCCTAAAATCACCCCCTCCCAAGATCTCAACTTGTTTTTTCCACCCTCAAACAATCAAGATCATCATCGTTTCACCACTACTAACAACAACCTCTCCGAAATGATTCTTGTTGGTAGTAACCCTTCCATTAATAATGCCACCTCTTCCTCCGCTTCTGCGACCACGACAATGTCGTCACCACCCCCATCGCAACCTTCGGTGATGGAGCTTCTCACCGGGATGGCGAACAACAACAACAACAACTCTAGTAGGGGTTTGAATTGTTTCGTTCCGATGTCGTCAGTTGTTGTCCCTGATCCTAGCTCTGTTTACACGGGAGGGTTTCCTGATCTTCATGATCAATTCAAACCAAGCCTTGGATTCTCTCTCGACGGATATGGTGTCGTCTCAACCGAGGCAGGTAATGGTGCAGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGTGTCTAATGGAGTTGAACAAGGGAAAGATCAGCAAGGAGATGATCATAATTCAAATGGGTATTGGAGTGGAATGTTGGGTGGAGGATCATGGTAA 945 42.43 MDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSNSSSSTSPTPPNSSSQSQPNFPKKILDHQLPQNPKITPSQDLNLFFPPSNNQDHHRFTTTNNNLSEMILVGSNPSINNATSSSASATTTMSSPPPSQPSVMELLTGMANNNNNNSSRGLNCFVPMSSVVVPDPSSVYTGGFPDLHDQFKPSLGFSLDGYGVVSTEAGNGAGRLMQLPFEDLKQVSNGVEQGKDQQGDDHNSNGYWSGMLGGGSW* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1030359 1032950 - CsaV3_5G001790.1 Csa05g00179 528566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00179 314 MobiDBLite consensus disorder prediction 287 314 - -
Csa05g00179 314 MobiDBLite consensus disorder prediction 84 158 - -
Csa05g00179 314 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Csa05g00179 314 MobiDBLite consensus disorder prediction 179 198 - -
Csa05g00179 314 MobiDBLite consensus disorder prediction 132 158 - -
Csa05g00179 314 MobiDBLite consensus disorder prediction 287 308 - -
Csa05g00179 314 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Csa05g00179 314 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 311 IPR045174 GO:0003700|GO:0006355
Csa05g00179 314 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 311 - -
Csa05g00179 314 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Csa05g00179 314 MobiDBLite consensus disorder prediction 94 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01310 Csa-Chr1:8448239 Csa05g00179 Csa-Chr5:1030359 9.01E-38 dispersed
Csa03g01968 Csa-Chr3:15540852 Csa05g00179 Csa-Chr5:1030359 1.32E-39 dispersed
Csa05g00179 Csa-Chr5:1030359 Csa06g01656 Csa-Chr6:14567183 5.66E-42 dispersed
Csa03g00790 Csa-Chr3:6868647 Csa05g00179 Csa-Chr5:1030359 4.22E-36 transposed
Csa03g03496 Csa-Chr3:31299195 Csa05g00179 Csa-Chr5:1030359 8.56E-32 transposed
Csa06g01902 Csa-Chr6:17144445 Csa05g00179 Csa-Chr5:1030359 2.77E-34 transposed
Csa05g00030 Csa-Chr5:146419 Csa05g00179 Csa-Chr5:1030359 2.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31666 PF02701 zf-Dof 5.60E-33 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00179 - - csv:101204617 558.14