Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00179 ATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGTCCAAAACCAAGTGTTTCAATTTTAGAGAGAAAAATTAGACCACAGAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAAGCAATACAAAGTTTTGTTATTACAATAATTATAGTCTCACACAACCAAGATACTTTTGCAAAACTTGCAGAAGGTATTGGACTGAAGGTGGATCTTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGAAAAAACAAAAGACCTTCTTCTAATTCTTCATCATCTACATCTCCCACACCACCTAATTCTTCTTCTCAATCTCAACCTAATTTCCCCAAGAAAATTCTTGATCATCAGCTCCCTCAAAACCCTAAAATCACCCCCTCCCAAGATCTCAACTTGTTTTTTCCACCCTCAAACAATCAAGATCATCATCGTTTCACCACTACTAACAACAACCTCTCCGAAATGATTCTTGTTGGTAGTAACCCTTCCATTAATAATGCCACCTCTTCCTCCGCTTCTGCGACCACGACAATGTCGTCACCACCCCCATCGCAACCTTCGGTGATGGAGCTTCTCACCGGGATGGCGAACAACAACAACAACAACTCTAGTAGGGGTTTGAATTGTTTCGTTCCGATGTCGTCAGTTGTTGTCCCTGATCCTAGCTCTGTTTACACGGGAGGGTTTCCTGATCTTCATGATCAATTCAAACCAAGCCTTGGATTCTCTCTCGACGGATATGGTGTCGTCTCAACCGAGGCAGGTAATGGTGCAGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGTGTCTAATGGAGTTGAACAAGGGAAAGATCAGCAAGGAGATGATCATAATTCAAATGGGTATTGGAGTGGAATGTTGGGTGGAGGATCATGGTAA 945 42.43 MDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSNSSSSTSPTPPNSSSQSQPNFPKKILDHQLPQNPKITPSQDLNLFFPPSNNQDHHRFTTTNNNLSEMILVGSNPSINNATSSSASATTTMSSPPPSQPSVMELLTGMANNNNNNSSRGLNCFVPMSSVVVPDPSSVYTGGFPDLHDQFKPSLGFSLDGYGVVSTEAGNGAGRLMQLPFEDLKQVSNGVEQGKDQQGDDHNSNGYWSGMLGGGSW* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1030359 1032950 - CsaV3_5G001790.1 Csa05g00179 528566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00179 314 MobiDBLite consensus disorder prediction 287 314 - -
Csa05g00179 314 MobiDBLite consensus disorder prediction 84 158 - -
Csa05g00179 314 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Csa05g00179 314 MobiDBLite consensus disorder prediction 179 198 - -
Csa05g00179 314 MobiDBLite consensus disorder prediction 132 158 - -
Csa05g00179 314 MobiDBLite consensus disorder prediction 287 308 - -
Csa05g00179 314 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Csa05g00179 314 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 311 IPR045174 GO:0003700|GO:0006355
Csa05g00179 314 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 311 - -
Csa05g00179 314 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Csa05g00179 314 MobiDBLite consensus disorder prediction 94 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00179 - - - csv:101204617 558.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01310 Csa-Chr1:8448239 Csa05g00179 Csa-Chr5:1030359 9.01E-38 dispersed
Csa03g01968 Csa-Chr3:15540852 Csa05g00179 Csa-Chr5:1030359 1.32E-39 dispersed
Csa05g00179 Csa-Chr5:1030359 Csa06g01656 Csa-Chr6:14567183 5.66E-42 dispersed
Csa03g00790 Csa-Chr3:6868647 Csa05g00179 Csa-Chr5:1030359 4.22E-36 transposed
Csa03g03496 Csa-Chr3:31299195 Csa05g00179 Csa-Chr5:1030359 8.56E-32 transposed
Csa06g01902 Csa-Chr6:17144445 Csa05g00179 Csa-Chr5:1030359 2.77E-34 transposed
Csa05g00030 Csa-Chr5:146419 Csa05g00179 Csa-Chr5:1030359 2.60E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02327 CCT 22 149 C2C2-Dof Transcription Factor Family AT1G29160 66.7 1.2e-42 169.9
Csa06g03703 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 51.4 2.1e-39 159.1
Csa05g00179 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.2e-42 168.7
Csa01g02327 CCT 9 149 C2C2-Dof Transcription Factor Family AT2G34140 55.8 3.1e-40 161.8
Csa06g03703 CCT 6 172 C2C2-Dof Transcription Factor Family AT2G34140 50.3 7.6e-39 157.1
Csa03g03190 CCT,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 66.7 9.2e-41 164.5
Csa05g00707 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 63.1 1.1e-38 157.5
Csa05g01834 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.5 2.8e-37 152.9
Csa01g02399 CCT,ECH 65 139 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.7e-37 152.1
Csa05g00179 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.1e-44 174.9
Csa01g02399 CCT,ECH 1 139 C2C2-Dof Transcription Factor Family AT5G02460 57.1 9.4e-40 161.4
Csa04g01478 CCT,ECH 42 122 C2C2-Dof Transcription Factor Family AT5G02460 82.7 1.2e-37 154.5
Csa03g03190 CCT,ECH 46 132 C2C2-Dof Transcription Factor Family AT3G55370 78.2 2.4e-37 153.3
Csa04g01478 CCT,ECH 43 176 C2C2-Dof Transcription Factor Family AT3G55370 57.9 5.3e-37 152.1
Csa01g00332 CCT 28 339 C2C2-Dof Transcription Factor Family AT5G60850 51.4 5.7e-45 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31666 PF02701 zf-Dof 5.60E-33 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00179 Csa_Chr05 FPKM 0.23323 0.0 1.126273 0.718156 0.0 0.0 0.0 0.0 0.0 0.0