Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00182 ATGGCGTCTCTACTACAAGAATCATCTCAAAAAGTACTCACGCCGGAGATTCTCCGCTCCGCCGCCAAACAATCACAGGGTTGCCTCGTCGTCCCAGTCCGACTCCGCCGTGCCATCAAGAAGTACCTTCGAGACCATGAAGTGTCTCACTTGAAGAGGAAGGTGTTGAGGCTGTCTCAATCATTCAGTGGCATCAAGGATGTTAATCTGCAGCTGGCAGCAGCCACTTCGAAGGAACTTGTTGAAGATCCTCTGAAATCCGTAGAGCAGTCCAAGCGCTGGAAGATTAAGAGCGTCTATGGTGATATTGGCTTTCAGTACACAGATGATGAGACCATTGCTTATGTCGCCTCTCGTATGCCTGCTGTTTTCTCTGCTTGCTACAGAGTTCTTAACGAGGTTCGTAGAAGACTACCCGATTTCTCTCCAACTAGTGTATTGGATTTTGGTGCTGGGACTGGTTCAGGTTTCTGGGCTTTGCGAGAGGTTTGGCCTCATTCTATACAGAAAGTTAATATAGTAGAACCATCGCAATCAATGCAACGTGCTGGGCAGAGTTTGATTCAAGGCCTAAAGAACTTGCCACTTATTCATGGTTATGACAGCATTCAGTCGCTTAACAAAGATATTAGTAAGTCAGAGAGAGAACATGACCTTGTCATTGCTTCTTATGTTCTCGGAGAGATACCATCATTGCAGGACAGGGTAACCATAGTACGCCAGCTTTGGAATCTTACAAAGGATGTTCTGGTTTTGGTTGAACCTGGAACACCACAAGGATCTAATATCATCTCTCAAATGCGATCTCATATACTGTGGATGGAAAAAAGAAAATGGAAGAAAAATGAAAACAAGAAAAATATAGCTTCTAAGGACTTGGTAACTCAAACGTGCGGTGCTTATGTAGTTGCTCCTTGTCCTCATGATGGAAAATGTCCATTAGAGAAATCTGGCAAGTATTGCCATTTTGTTCAGCGGTTGGAAAGGACAACTACACAACGAATTTACAAGCGTTCCAAGGGTGAATCTTTAAGAGGCTTTGAGGATGAGAAATTTTCTTTTGTTGCTTTCAGGCGTGGACAACGTCCTCGGGACCCGTGGCCTCTCGATGGCATGAGATTTGAGACACTAAAGGAACAGCATGCCAAAAGAAATCCAGAAGATCTAGAGATTGATTATGAGGATCTATTAAAGATGGAGAATCAAGTTCAAGTTGTTCCATACCAAGAAGTGGATCCAGTTTCATATGATTCTGATGTCATGGAAACTGAAGTTCTTGATGACGGTGAAGAAGAAGAGGGAGAGGAACAAGGAGAACCAGCACTTGCTGATCTCGGTGGTGGTTGGGGCAGGATTGTATTTTCACCAAGACGAAGAGGAAATCACATAACGATGAATATTTGTCGATCGACAAAACGAGATGCCTCAGAGGGCTCGTTTGACCAAGTTGTTGTAACGCAAAGCCAGAATCCTACTCTACACCATCAAGCTCGTAAGTCAATTTGGGGTGATTTATGGCCTTTTTGA 1527 43.94 MASLLQESSQKVLTPEILRSAAKQSQGCLVVPVRLRRAIKKYLRDHEVSHLKRKVLRLSQSFSGIKDVNLQLAAATSKELVEDPLKSVEQSKRWKIKSVYGDIGFQYTDDETIAYVASRMPAVFSACYRVLNEVRRRLPDFSPTSVLDFGAGTGSGFWALREVWPHSIQKVNIVEPSQSMQRAGQSLIQGLKNLPLIHGYDSIQSLNKDISKSEREHDLVIASYVLGEIPSLQDRVTIVRQLWNLTKDVLVLVEPGTPQGSNIISQMRSHILWMEKRKWKKNENKKNIASKDLVTQTCGAYVVAPCPHDGKCPLEKSGKYCHFVQRLERTTTQRIYKRSKGESLRGFEDEKFSFVAFRRGQRPRDPWPLDGMRFETLKEQHAKRNPEDLEIDYEDLLKMENQVQVVPYQEVDPVSYDSDVMETEVLDDGEEEEGEEQGEPALADLGGGWGRIVFSPRRRGNHITMNICRSTKRDASEGSFDQVVVTQSQNPTLHHQARKSIWGDLWPF* 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1059362 1064538 - CsaV3_5G001820.1 Csa05g00182 528569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00182 508 Pfam Mitochondrial small ribosomal subunit Rsm22 290 507 IPR015324 GO:0006412|GO:0008168
Csa05g00182 508 Pfam Mitochondrial small ribosomal subunit Rsm22 111 274 IPR015324 GO:0006412|GO:0008168
Csa05g00182 508 Gene3D Vaccinia Virus protein VP39 95 291 IPR029063 -
Csa05g00182 508 PANTHER 37S RIBOSOMAL PROTEIN S22 34 508 - -
Csa05g00182 508 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 270 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00182 - - - csv:101205106 993.801
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g204 . . . . . . . . . . Cma02g00930 Cma15g01302 Car02g00679 Car15g01173 . . Cpe05g00781 . . . . . . . . . . . . . . . . . . . Csa05g00182 Chy09g01314 . . . . . . . . . . Cmo02g00939 Cmo15g01370 . . . . . . Bhi12g00105 . . . . . . Cla01g00162 Cam01g0168 Cec01g0166 Cco01g0169 Clacu01g0164 Cmu01g0163 Cre09g2343 Lsi09g00154 . . Cme09g01863
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011578 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00182 Csa_Chr05 FPKM 2.330012 2.223525 0.0 0.0 0.180406 0.353891 0.317045 0.0 0.0 0.0