Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00188 ATGCAGAATTCTCGAGATGAGTTGTTGTGCATCAGATATAGAAGCAAGAAGAAGAGCAAAAACAATGGCAAGAAAGATCCCAACAACCATAACCAAAACAACTGCATTAACAAGAGAACCAGTTTCTATGACTTCTTCTGGTCTTTCCTCTTTTCCCTCTCTTGTCTTGTCTGCTTATTATACTCCGAGCTCGTCCTTGGCTATGGCGATGCTGGGGATTCTTCTTCTGTAAACAAAAGCACTTCTTGCCATACTCATGGAAATCAGAAGGCTGGTCACGCTTGTTCATCTATAGCAAATGGAAGCAATAAGTCGAAGGCATTTGAAGAAGCAGTACTGAGTGCACTAGGATATTCATCTTTGATATGTAAAGTACAACAGCCGGAGAAGAAACCATGCTCAACAGAACATCAGGAAAGTCCTAGTGGCAGAAGCTCTCGCCCCACATATCTTAATTTGGACGAGTTTCGGAACATTACAATGAAAGATAAAGAAGGCAAAATGCCTAGCCAGTTAGTTAACATCACTCATCGGCTTGAACCAGATGGATCGGATTACAACTATGCATCTGCATCGAAGGGTGCAAAGGTGGTTGCTCATAACAAGGAGGCAAAAGGAGCATGTAATATACTGGAGAAAGACCATGATAAGTACCTGAGGAATCCTTGTTCCGTGGGAGGGAAGTATGTTGTGATTGAGCTCTCAGAAGAGACCTTGGTTGATGCTGTGAAAATTGCAAATTTTGAACATTATTCTTCTAATTTCAAGGAATTCAATTTGTCTGGCAGTTTGAGCTACCCAACTGAGACATGGTCTAACTTGGGAAATTTTGTTGCTGCTAATGTAAAACATGCTCAAGTCTTCCAGCTGCCAGAACCAAAATGGGTTAGGTACTTAAAGCTGGATCTGCTTAGTCATTATGGATCAGAGTTTTACTGCACATTGAGTATAGTAGAAGTCTATGGTGTTGATGCCATGGGGAGGATGCTTGAAGATCTCATTGTCACCTCTTCAAAAGCTGCTCCCAAGAAAATTTCACTAGAAGAACCTAATTCAACTGTGTCGCCTTCTGTAAATTCAGATGTTGGCCCAGTTAATGAGTTAGAAAATGATGAGAATAACTTGTCAAGTGCTGGTGCAGGGCCAGAAAGCATGGATGATCCGACAAGTCTTGCTCTAGAGGTTGCAAAAAATGTGAAAGTTAACAAATTTCCTGATCCTGTAATTGAAGCTAGACAACAGCTGAACGGTAGAATACCTGGTGACACTGTCCTGAAGATATTGATGCAAAAGGTGAGGTCACTTGAATCTAATTTGTCTGTGCTAGAGGAGTATATCAAAGAATTGAACCGACGCCAAGGGAAACTCTTACCAGATCTTGAAAAAGAAATAGTTAGAATATCATTGCTTCTGGAGAATACTAAGTTAGCTATCACGGATCTCATGGTTTGGAAGGAAACAATTGAAAAAGAAATAGCTCACTTCAAATCATGGAAGATGGCTACTACATCTCAAATGAATGAATTGGTCAGAGAGAACAATATGCTCAGCTTAGATATTGAAAAAATATTAAACAATCAAGCAAAGCTGGAAAGTAAAGAACTCGCCGTGCTAGCCGTGAGTTTTCTTTTCATGTGCATTGCAACTCTGAGGCTAATATCAGCTAAAATTCTCATGTTTTTTGGAGATTGTCAATCGGAGAAAACGTGCTCGACCAGCGGCGGTTGGGTATGGATACTTGTTAGCAGCATGATGACGGTAATCCTCGCATTCATATACAGTTAA 1785 40.5 MQNSRDELLCIRYRSKKKSKNNGKKDPNNHNQNNCINKRTSFYDFFWSFLFSLSCLVCLLYSELVLGYGDAGDSSSVNKSTSCHTHGNQKAGHACSSIANGSNKSKAFEEAVLSALGYSSLICKVQQPEKKPCSTEHQESPSGRSSRPTYLNLDEFRNITMKDKEGKMPSQLVNITHRLEPDGSDYNYASASKGAKVVAHNKEAKGACNILEKDHDKYLRNPCSVGGKYVVIELSEETLVDAVKIANFEHYSSNFKEFNLSGSLSYPTETWSNLGNFVAANVKHAQVFQLPEPKWVRYLKLDLLSHYGSEFYCTLSIVEVYGVDAMGRMLEDLIVTSSKAAPKKISLEEPNSTVSPSVNSDVGPVNELENDENNLSSAGAGPESMDDPTSLALEVAKNVKVNKFPDPVIEARQQLNGRIPGDTVLKILMQKVRSLESNLSVLEEYIKELNRRQGKLLPDLEKEIVRISLLLENTKLAITDLMVWKETIEKEIAHFKSWKMATTSQMNELVRENNMLSLDIEKILNNQAKLESKELAVLAVSFLFMCIATLRLISAKILMFFGDCQSEKTCSTSGGWVWILVSSMMTVILAFIYS* 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1104335 1108422 + CsaV3_5G001880.1 Csa05g00188 528575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00188 594 Gene3D - 200 332 - -
Csa05g00188 594 PANTHER SUN DOMAIN-CONTAINING PROTEIN 5 100 593 - -
Csa05g00188 594 PANTHER SUN DOMAIN-CONTAINING PROTEIN 5 23 105 - -
Csa05g00188 594 Pfam Sad1 / UNC-like C-terminal 200 323 IPR012919 -
Csa05g00188 594 MobiDBLite consensus disorder prediction 346 386 - -
Csa05g00188 594 ProSiteProfiles SUN domain profile. 165 325 IPR012919 -
Csa05g00188 594 Coils Coil 506 526 - -
Csa05g00188 594 PANTHER MEMBRANE PROTEIN CH1 RELATED 100 593 IPR045120 GO:0016020
Csa05g00188 594 PANTHER MEMBRANE PROTEIN CH1 RELATED 23 105 IPR045120 GO:0016020
Csa05g00188 594 SUPERFAMILY Galactose-binding domain-like 224 321 IPR008979 -
Csa05g00188 594 MobiDBLite consensus disorder prediction 348 380 - -
Csa05g00188 594 Coils Coil 425 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00188 - - - csv:101208720 1108.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00188 Csa-Chr5:1104335 Csa05g03141 Csa-Chr5:31280130 2.02E-111 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g155 . . . . . . . . . . Cma02g00925 . Car02g00673 . . . Cpe05g00787 . . . . . . . . . . . . . . . . . . . Csa05g00188 . . . . . . . . . . . Cmo02g00933 . . . . . . . . . . . . . . Cla01g00171 Cam01g0175 Cec01g0173 Cco01g0176 Clacu01g0171 Cmu01g0169 Cre09g2336 Lsi09g00159 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012901 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 0 0 0 1 1 1 1 1 1 0 1 3 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00188 Csa_Chr05 FPKM 3.999495 4.149932 3.522409 3.43457 2.086744 3.021894 1.543995 0.108304 0.0 0.0