Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00191 ATGACTTATAATGGAGGAGATTCGTATAGGCAGTCTTGTGTTTCGGCCCAAGGTTGTGGAAGAGATGATCTGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATATACCTCGCGTTGATGAGAGAGTCTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGACTCGAAGATTCTATGTCGTGTAATTCATATTGAGCCGCTGGCGGATCATGAATCGGACGAGGTTTATGCGCAAATAACTTTGATGCCAGAATCAAATCAAAATGAGCCTAAAAGTATGGATCCATGTCCTCCCGAACCACCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGATACTAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCCACCGAGTGCCTACCACCTTTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTTCATGGATATGAGTGGAGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCCAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAATGGAGAGTTGCGTGTTGGGGTAAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACTACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGCCTCAATAAATACTTGGAAGCTGTCAACAACAAGTTTTCTGTTGGCATGAGATTTAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGTAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTACAATGGGATGAACAAACATCTATTCTAAGACCTGACAGGGTATCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAACCCATTTCAAAAAATAAAAGGCCTCGACAACCAACTCCAGCTCATGATGGTGCTGATTTGACTAAGCCAACACATTGGGATTCTGGATTGGCACAGTCACATGATGGTAAGCAATGCAGTAATGCAGCTGAAGGCAGAAAAGGTGAAAATAATGAATCGTGTCACCATAGAGAGACAGATACTATCAGCAACAGTTCATGTGTATCAAGAACACAGACTGATACCTGGCTATCTCCTACTCAATCGAATAGTTATAAACACCCAGTAAATGACATGGCGCAGGATTCCAAAACTGTCCCTAGCAGTGGTTGGACCTTTCTATTAGGAACTCCAACCTCTCACTTGGTTAAGTTAAGTGATGATCAAATACTTGACCCCATTGAAAGTGGGAAGAAAGGTGAAACGGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTGCTGAGAAAGCATCTTCTCAACCAAGCAGTGGGTCTAGCGACACAGATGGGCGCATCAGTACCTTATCCGTGGCTCAGTCCGATCCAAAATCTGACAACTTAGAAGTCTCTATAGAAAGAAAATCAGAACTATCACAAGCATCTCTGAAGGAGATTCAATGCAATCAAAGTAGCTCAGCTAACACTAGAAGCCGCACCAAGGTTCTCATGCATGGAATGGCCGTGGGTAGGGCAGTGGACTTAACCATATTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACCGACGATGAAGGGGATATGATGCTTGTTGGAGATGATCCATGGGAAGAATTCCGTAACATGGTCAGGAGAATTTTTATATGCTCTAAGGAGCAAGTGAAAAATATGAGCTCAGGAAGCAAGCAGCTGACATCAATAGAAGTTGAAGGAGATGTAGTAACCCCAGTCTCCCCTGCAGTTTGA 2076 44.08 MTYNGGDSYRQSCVSAQGCGRDDLYMELWRACAGPLVDIPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLDSKILCRVIHIEPLADHESDEVYAQITLMPESNQNEPKSMDPCPPEPPRPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGAVDISPHWPNSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVTGLSQPISKNKRPRQPTPAHDGADLTKPTHWDSGLAQSHDGKQCSNAAEGRKGENNESCHHRETDTISNSSCVSRTQTDTWLSPTQSNSYKHPVNDMAQDSKTVPSSGWTFLLGTPTSHLVKLSDDQILDPIESGKKGETVASCRLFGIDLNHLAAEKASSQPSSGSSDTDGRISTLSVAQSDPKSDNLEVSIERKSELSQASLKEIQCNQSSSANTRSRTKVLMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFRNMVRRIFICSKEQVKNMSSGSKQLTSIEVEGDVVTPVSPAV* 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1127742 1136518 + CsaV3_5G001910.1 Csa05g00191 528578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00191 691 CDD B3_DNA 127 229 IPR003340 GO:0003677
Csa05g00191 691 Gene3D - 290 363 - -
Csa05g00191 691 MobiDBLite consensus disorder prediction 427 463 - -
Csa05g00191 691 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Csa05g00191 691 ProSiteProfiles PB1 domain profile. 580 661 IPR000270 GO:0005515
Csa05g00191 691 SMART B3_2 129 231 IPR003340 GO:0003677
Csa05g00191 691 Pfam AUX/IAA family 626 658 IPR033389 -
Csa05g00191 691 Pfam AUX/IAA family 570 616 IPR033389 -
Csa05g00191 691 MobiDBLite consensus disorder prediction 393 414 - -
Csa05g00191 691 MobiDBLite consensus disorder prediction 360 374 - -
Csa05g00191 691 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Csa05g00191 691 Pfam Auxin response factor 255 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa05g00191 691 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Csa05g00191 691 PANTHER AUXIN RESPONSE FACTOR 9 19 678 - -
Csa05g00191 691 SUPERFAMILY CAD & PB1 domains 575 656 - -
Csa05g00191 691 MobiDBLite consensus disorder prediction 520 551 - -
Csa05g00191 691 MobiDBLite consensus disorder prediction 360 463 - -
Csa05g00191 691 Gene3D - 126 231 IPR015300 -
Csa05g00191 691 MobiDBLite consensus disorder prediction 520 549 - -
Csa05g00191 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa05g00191 691 Gene3D - 575 668 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00677 Csa-Chr4:4565178 Csa05g00191 Csa-Chr5:1127742 0 dispersed
Csa05g00191 Csa-Chr5:1127742 Csa07g01449 Csa-Chr7:14775256 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31669 PF02309 AUX_IAA 7.50E-11 CL0072 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00191 K14486 - csv:101209208 1387.09