Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00199 ATGGCGGAAGTTTTTGATGACGAAACGGAACAGACGATTTCTATTCAGGAGTATCTGAAGGAAGTTGAGGAACAGGAGCTGGAAGCGGATTTAGTTTTGGGAGGTGATGAGGGAAAGGAATGTACTTACAACAAGGGTTACATGAAGAGACAAGCCATTTTCTCATGTCTAACTTGTACCCCTGATGGAAATGCTGGAGTTTGCACAGCCTGCAGTTTGTCATGTCATGATGGACACGAGATTGTGGAATTATGGACCAAGAGGAACTTCAGGTGCGACTGTGGAAATTCAAAATTCGGAAATTTCGTCTGCAAGCTGTTCTCAAACAAAGATGTAGAAAATTCCAACAATTCGTACAATCATAATTTTAAAGGATCATACTGCATATGCAATCGCCCTTACCCTGATCCAGATGTCGAAGAGCAGGTGGAGATGATTCAGTGTTGTATGTGCGAGGATTGGTTTCATGAGGAACATCTCGGTCTCAGTTCCATAGATGAGATTCCCAGAGATGAAGAAGGGGAGCCCCTATACGAGGACTTCATATGCAAAGCGTGCTCTGCAGTTTGTTCTTTTCTGAGTCAATATCCTTCATCTATTTGGGCTGTGGGAAGGCAGTCTGATACCTCTATGGACGTTAGCAACAAAATTGATGCTTCAGAGCTTCCAGCTAGTACATCTGTAAAGCACAATGATGATGTTAATCTTCATGATTCTGCCAATGCGGATCCTACAGTAGATACTGACAAATCTGCTGGCAAGGATAGCTTGCTCAGTGAACTTCCTGAAAATCCTAGTTCTAGCGAACCAATTAAAGATAACAATCAAACTGATAGTTGTGTGCTTGGAACTTCTTTGTCGGCTTCTATAATTGTTGAAAACAAGCCAATGTTTCTTTCAAAGAATTGGAGGGGTGCCTTGTGCAGATGTGAAAAGTGCATCAACAATTACAAGTTGAATAATATTAGTTTCCTGCTAGATGAAGAGGACTCTATTGCTGAGTATGAAAAAATGGCAAAACAGAAGAGGGAAGAGAAGTTATTGCAACAAGAAGGTGCTGAGTCAAAGTTGTTTGATAACCTTGGGCATGTGGAGAAAATTGAGATTCTGAATGGCATTGCAGATATGAAGGATGAGATTCGTACCTTCCTGGAATCATTCGACTCGTCGAAGCCTATTACATCTGCAGATATTCACCAGGTTTTTGAGAATCTAGCTAAAAAGAGACGCCGTACTGAATGA 1242 41.38 MAEVFDDETEQTISIQEYLKEVEEQELEADLVLGGDEGKECTYNKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHEIVELWTKRNFRCDCGNSKFGNFVCKLFSNKDVENSNNSYNHNFKGSYCICNRPYPDPDVEEQVEMIQCCMCEDWFHEEHLGLSSIDEIPRDEEGEPLYEDFICKACSAVCSFLSQYPSSIWAVGRQSDTSMDVSNKIDASELPASTSVKHNDDVNLHDSANADPTVDTDKSAGKDSLLSELPENPSSSEPIKDNNQTDSCVLGTSLSASIIVENKPMFLSKNWRGALCRCEKCINNYKLNNISFLLDEEDSIAEYEKMAKQKREEKLLQQEGAESKLFDNLGHVEKIEILNGIADMKDEIRTFLESFDSSKPITSADIHQVFENLAKKRRRTE* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1187513 1190758 + CsaV3_5G001990.1 Csa05g00199 528586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00199 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 189 IPR013083 -
Csa05g00199 413 ProSiteProfiles Zinc finger UBR-type profile. 39 109 IPR003126 GO:0008270
Csa05g00199 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR7 5 412 IPR040204 GO:0008270|GO:0061630
Csa05g00199 413 CDD PHD_UBR7 127 186 - -
Csa05g00199 413 Pfam Putative zinc finger in N-recognin (UBR box) 41 105 IPR003126 GO:0008270
Csa05g00199 413 Coils Coil 402 413 - -
Csa05g00199 413 Coils Coil 325 345 - -
Csa05g00199 413 MobiDBLite consensus disorder prediction 260 276 - -
Csa05g00199 413 MobiDBLite consensus disorder prediction 222 276 - -
Csa05g00199 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR7-RELATED 5 412 - -
Csa05g00199 413 SUPERFAMILY FYVE/PHD zinc finger 114 200 IPR011011 -
Csa05g00199 413 SMART PHD_3 127 187 IPR001965 -
Csa05g00199 413 SMART push_1 39 108 IPR003126 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00199 K11979 UBR7; E3 ubiquitin-protein ligase UBR7 [EC:2.3.2.27] - csv:101208236 836.639
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g134 . . . . . . Bma07g01685 . . . Cma02g00914 Cma15g01281 Car02g00665 Car15g01155 . . Cpe05g00796 . . . . . . . . . . . . . . . Cone12ag0248 . . . Csa05g00199 Chy09g01298 . . Blo19g00368 . Bda09g00014 . . . . . Cmo02g00921 Cmo15g01350 . . . . . Cpe13g00108 Bhi12g00138 . . Lac11g1984 Hepe06g1474 . Lcy12g1566 Cla01g00182 Cam01g0186 Cec01g0183 Cco01g0186 Clacu01g0183 Cmu01g0179 Cre09g2326 Lsi09g00170 . . Cme09g01844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009471 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 0 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00199 Csa_Chr05 FPKM 31.254223 33.753914 22.760389 20.025566 37.615467 34.609634 42.386536 23.292608 26.936844 30.592943