Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00202 ATGCCTGTCCTTCACTCCCATCTTCCTCCCATTCGTTTTTCTTCATTAACCCTTTTCCATTTCTTTCTCATCATGCCATTACTCCGTCCCGCCGCCGCGTCGTTGCCGGAAGTTTTTTCCCCACGCCTCGCCGATAAGGGCCCTGTTATTCCAGTACCCAATCTCGTTAAGTTTCTTGAGCGTATTCAGGTTGTGGCTCTGAATTCGTTTGGGAAATTGGATTTTGATCTTAAATATTATGTCGATTTGTCTTTGAAATTCGATTTGAATTCTACCCAAATCGCTTTTGATGCCCTTGAACGATCCTCCAATGGCTCTGTTTCCGTTGAGAATTTGAGGACATTCATTTCGAACTATTTCGATAGTGCCGGAACCGACTTGGTTTACTCTAATCCGGCCGATTTTGACCCTCATCCTGATGGGTTTTTGCCCAAAGTTGAGAATGTGGAAGTTAGAGCTTGGGCTTTCGATATTCATAATTTTTGGAAGAATCTTAGCCGTAGAGTCTCTGATGATCTCATTCATCATCCTGATACCCACACTTTGCTGCCGTTGCCTGAGCCTGTTGTCGTTCCGGGATCAAGATTCCGGGAAATTTATTATTGGGATTCTTATTGGATTATCAGAGGTTTGTTAGCTAGTAAAATGTACGATACTGCTAAGGGAATTGTTATTAATCTAATTTCAATGATCGATGAGTTTGGCCATGTTCTTAATGGTGCCAGATCTTATTACACTAACAGAAGTCAGCCTCCCCTTTTGAGCTCCATGGTTTATGACATATACCTTAGGACTGGGGATTTAGAGTTTGTGAGAAATTCACTCCCTGCTTTAATCAAAGAGCATAAGTTTTGGAATTCAGGATTCCATTCAATTACTGTCCAAAATGGAAATGGAAATCACTCCTTGTCTAGGTACTATGCAATGTGGAACGAACCGAGGCCGGAATCTTCGCTGGTGGATGAGAAAGTTGCCTCGAAGTTCGTGAATAACTATGAAAAAAAGCATCTATACCGGGAAATCGCATCAGCAGCCGAATCCGGTTGGGATTTCAGTTCAAGATGGATGAGGGATTCGACAGACTTGTCGACATTGGCTACAACTTCAATCTTGCCAGTTGATCTCAATGTATTCATACTCAAGATGGAACTTGACATTTCCAATTTGGCAAGAGCCGTTGGAGACTACTGCACGGCAGAACACTTTTTTGAGGCCTCTCTAGTTAGAAAGAAGACAATCAACTCTATTTTTTGGAATTCAGAGAAAGGACAATGGCTTGATTACTGGCTTGATAACGGCTCGTACAAGGGTGCTCATTCATGGGATGTTCGAAACCAGAACCAGAACGTATACGCTTCAAACTTCATTCCCTTGTGGGTCGAATCATTTTACTCCGATAGCAGACAAATGAAGAAAGTTTTGAAAAGTTTACGGAACTCAGGCTTGTTATGCAATGCTGGGATTGCAACTTCCATGATTAATTCGGGGGAACAATGGGATTTCCCGAACGGTTGGGCACCAATCCAACACATGATTGTCGAGGGACTGGCAAGGTCTGAACTGCCAGAAGCAAAGGCATTGGCCGAGGACATCGCCGCCAGATGGCTCCGAACCAACTATGTAGCTTACAAGCACACAGGATTTATGCATGAGAAATATGATGTCCAAAAGTGTGGAGGCTTTGGTGGAGGAGGTGAATACGTCCCTCAGACTGGCTTTGGATGGTCAAATGGTGTTGTGTTGGCATTCCTTGAAGAGTTTGGATGGCCAAAAGATCAAAAGATAGACTGCTATTTACCTTCTTAA 1806 43.19 MPVLHSHLPPIRFSSLTLFHFFLIMPLLRPAAASLPEVFSPRLADKGPVIPVPNLVKFLERIQVVALNSFGKLDFDLKYYVDLSLKFDLNSTQIAFDALERSSNGSVSVENLRTFISNYFDSAGTDLVYSNPADFDPHPDGFLPKVENVEVRAWAFDIHNFWKNLSRRVSDDLIHHPDTHTLLPLPEPVVVPGSRFREIYYWDSYWIIRGLLASKMYDTAKGIVINLISMIDEFGHVLNGARSYYTNRSQPPLLSSMVYDIYLRTGDLEFVRNSLPALIKEHKFWNSGFHSITVQNGNGNHSLSRYYAMWNEPRPESSLVDEKVASKFVNNYEKKHLYREIASAAESGWDFSSRWMRDSTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYCTAEHFFEASLVRKKTINSIFWNSEKGQWLDYWLDNGSYKGAHSWDVRNQNQNVYASNFIPLWVESFYSDSRQMKKVLKSLRNSGLLCNAGIATSMINSGEQWDFPNGWAPIQHMIVEGLARSELPEAKALAEDIAARWLRTNYVAYKHTGFMHEKYDVQKCGGFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPKDQKIDCYLPS* 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1213345 1217307 - CsaV3_5G002020.1 Csa05g00202 528589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00202 601 PANTHER TREHALASE 59 597 - -
Csa05g00202 601 PANTHER TREHALASE 59 597 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 Gene3D - 58 597 IPR012341 GO:0005975
Csa05g00202 601 SUPERFAMILY Six-hairpin glycosidases 70 590 IPR008928 GO:0005975
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 234 252 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 303 320 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 338 355 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 370 387 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 413 429 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 491 507 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 571 584 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 Pfam Trehalase 73 588 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 ProSitePatterns Trehalase signature 2. 498 507 IPR018232 GO:0004555|GO:0005991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00202 K01194 - csv:101208719 1222.99