Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00202 ATGCCTGTCCTTCACTCCCATCTTCCTCCCATTCGTTTTTCTTCATTAACCCTTTTCCATTTCTTTCTCATCATGCCATTACTCCGTCCCGCCGCCGCGTCGTTGCCGGAAGTTTTTTCCCCACGCCTCGCCGATAAGGGCCCTGTTATTCCAGTACCCAATCTCGTTAAGTTTCTTGAGCGTATTCAGGTTGTGGCTCTGAATTCGTTTGGGAAATTGGATTTTGATCTTAAATATTATGTCGATTTGTCTTTGAAATTCGATTTGAATTCTACCCAAATCGCTTTTGATGCCCTTGAACGATCCTCCAATGGCTCTGTTTCCGTTGAGAATTTGAGGACATTCATTTCGAACTATTTCGATAGTGCCGGAACCGACTTGGTTTACTCTAATCCGGCCGATTTTGACCCTCATCCTGATGGGTTTTTGCCCAAAGTTGAGAATGTGGAAGTTAGAGCTTGGGCTTTCGATATTCATAATTTTTGGAAGAATCTTAGCCGTAGAGTCTCTGATGATCTCATTCATCATCCTGATACCCACACTTTGCTGCCGTTGCCTGAGCCTGTTGTCGTTCCGGGATCAAGATTCCGGGAAATTTATTATTGGGATTCTTATTGGATTATCAGAGGTTTGTTAGCTAGTAAAATGTACGATACTGCTAAGGGAATTGTTATTAATCTAATTTCAATGATCGATGAGTTTGGCCATGTTCTTAATGGTGCCAGATCTTATTACACTAACAGAAGTCAGCCTCCCCTTTTGAGCTCCATGGTTTATGACATATACCTTAGGACTGGGGATTTAGAGTTTGTGAGAAATTCACTCCCTGCTTTAATCAAAGAGCATAAGTTTTGGAATTCAGGATTCCATTCAATTACTGTCCAAAATGGAAATGGAAATCACTCCTTGTCTAGGTACTATGCAATGTGGAACGAACCGAGGCCGGAATCTTCGCTGGTGGATGAGAAAGTTGCCTCGAAGTTCGTGAATAACTATGAAAAAAAGCATCTATACCGGGAAATCGCATCAGCAGCCGAATCCGGTTGGGATTTCAGTTCAAGATGGATGAGGGATTCGACAGACTTGTCGACATTGGCTACAACTTCAATCTTGCCAGTTGATCTCAATGTATTCATACTCAAGATGGAACTTGACATTTCCAATTTGGCAAGAGCCGTTGGAGACTACTGCACGGCAGAACACTTTTTTGAGGCCTCTCTAGTTAGAAAGAAGACAATCAACTCTATTTTTTGGAATTCAGAGAAAGGACAATGGCTTGATTACTGGCTTGATAACGGCTCGTACAAGGGTGCTCATTCATGGGATGTTCGAAACCAGAACCAGAACGTATACGCTTCAAACTTCATTCCCTTGTGGGTCGAATCATTTTACTCCGATAGCAGACAAATGAAGAAAGTTTTGAAAAGTTTACGGAACTCAGGCTTGTTATGCAATGCTGGGATTGCAACTTCCATGATTAATTCGGGGGAACAATGGGATTTCCCGAACGGTTGGGCACCAATCCAACACATGATTGTCGAGGGACTGGCAAGGTCTGAACTGCCAGAAGCAAAGGCATTGGCCGAGGACATCGCCGCCAGATGGCTCCGAACCAACTATGTAGCTTACAAGCACACAGGATTTATGCATGAGAAATATGATGTCCAAAAGTGTGGAGGCTTTGGTGGAGGAGGTGAATACGTCCCTCAGACTGGCTTTGGATGGTCAAATGGTGTTGTGTTGGCATTCCTTGAAGAGTTTGGATGGCCAAAAGATCAAAAGATAGACTGCTATTTACCTTCTTAA 1806 43.19 MPVLHSHLPPIRFSSLTLFHFFLIMPLLRPAAASLPEVFSPRLADKGPVIPVPNLVKFLERIQVVALNSFGKLDFDLKYYVDLSLKFDLNSTQIAFDALERSSNGSVSVENLRTFISNYFDSAGTDLVYSNPADFDPHPDGFLPKVENVEVRAWAFDIHNFWKNLSRRVSDDLIHHPDTHTLLPLPEPVVVPGSRFREIYYWDSYWIIRGLLASKMYDTAKGIVINLISMIDEFGHVLNGARSYYTNRSQPPLLSSMVYDIYLRTGDLEFVRNSLPALIKEHKFWNSGFHSITVQNGNGNHSLSRYYAMWNEPRPESSLVDEKVASKFVNNYEKKHLYREIASAAESGWDFSSRWMRDSTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYCTAEHFFEASLVRKKTINSIFWNSEKGQWLDYWLDNGSYKGAHSWDVRNQNQNVYASNFIPLWVESFYSDSRQMKKVLKSLRNSGLLCNAGIATSMINSGEQWDFPNGWAPIQHMIVEGLARSELPEAKALAEDIAARWLRTNYVAYKHTGFMHEKYDVQKCGGFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPKDQKIDCYLPS* 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1213345 1217307 - CsaV3_5G002020.1 Csa05g00202 528589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00202 601 PANTHER TREHALASE 59 597 - -
Csa05g00202 601 PANTHER TREHALASE 59 597 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 Gene3D - 58 597 IPR012341 GO:0005975
Csa05g00202 601 SUPERFAMILY Six-hairpin glycosidases 70 590 IPR008928 GO:0005975
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 234 252 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 303 320 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 338 355 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 370 387 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 413 429 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 491 507 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 PRINTS Glycosyl hydrolase family 37 signature 571 584 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 Pfam Trehalase 73 588 IPR001661 GO:0004555|GO:0005991
Csa05g00202 601 ProSitePatterns Trehalase signature 2. 498 507 IPR018232 GO:0004555|GO:0005991
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00202 K01194 TREH, treA, treF; alpha,alpha-trehalase [EC:3.2.1.28] - csv:101208719 1222.99
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g00202 . 45 596 Trehalose Biosynthesis Gene Families AT4G24040 56.6 2.0e-190 662.5
Csa07g00478 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1373.6
Csa06g03720 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1350.5
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1093.2
Csa01g00164 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.2e-304 1041.6
Csa04g02256 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.7e-248 855.5
Csa01g02281 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.8 7.1e-242 833.6
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.4 0.0e+00 1349.0
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1213.4
Csa03g00151 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1109.7
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1109.7
Csa07g00478 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.7 0.0e+00 1095.5
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.5 0.0e+00 1327.4
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 68.0 0.0e+00 1231.9
Csa06g03720 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.3 0.0e+00 1084.3
Csa03g00151 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Csa07g00478 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-312 1067.4
Csa03g00151 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.5 0.0e+00 1266.1
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Csa07g00478 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.9 0.0e+00 1138.6
Csa05g02351 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.6
Csa01g00164 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1093.6
Csa05g02351 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1195.6
Csa01g00164 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Csa06g03720 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.5 6.4e-293 1003.4
Csa07g00478 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 3.5e-291 997.7
Csa03g00151 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.9e-285 977.2
Csa04g02256 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.5
Csa01g02281 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.3 0.0e+00 1357.4
Csa05g02351 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.8e-306 1048.5
Csa01g00164 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 7.4e-300 1026.5
Csa06g03720 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.8e-299 1024.6
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.4e-298 1021.5
Csa07g00478 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 2.0e-289 991.9
Csa03g00151 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1381.7
Csa06g03720 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1186.0
Csa07g00478 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.0 0.0e+00 1156.7
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.6
Csa01g00164 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1107.4
Csa04g02256 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.6 1.3e-303 1038.9
Csa01g02281 . 92 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 4.1e-289 990.7
Csa04g02256 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.5
Csa01g02281 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.3 0.0e+00 1357.4
Csa04g02256 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.7e-248 855.5
Csa01g02281 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.8 7.1e-242 833.6
Csa04g02256 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 3.8e-194 675.2
Csa01g02281 . 92 610 Trehalose Biosynthesis Gene Families AT1G17000 61.7 1.1e-190 663.7
Csa04g02256 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.6 1.3e-303 1038.9
Csa01g02281 . 92 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 4.1e-289 990.7
Csa03g00151 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1381.7
Csa06g03720 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1186.0
Csa07g00478 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.0 0.0e+00 1156.7
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.6
Csa01g00164 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1107.4
Csa03g00151 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.5 0.0e+00 1266.1
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Csa07g00478 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.9 0.0e+00 1138.6
Csa05g02351 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.6
Csa01g00164 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1093.6
Csa07g00478 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1373.6
Csa06g03720 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1350.5
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1093.2
Csa01g00164 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.2e-304 1041.6
Csa05g02351 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1195.6
Csa01g00164 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Csa06g03720 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.5 6.4e-293 1003.4
Csa07g00478 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 3.5e-291 997.7
Csa03g00151 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.9e-285 977.2
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.4 0.0e+00 1349.0
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1213.4
Csa03g00151 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1109.7
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1109.7
Csa07g00478 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.7 0.0e+00 1095.5
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.5 0.0e+00 1327.4
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 68.0 0.0e+00 1231.9
Csa06g03720 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.3 0.0e+00 1084.3
Csa03g00151 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Csa07g00478 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-312 1067.4
Csa05g02351 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.8e-306 1048.5
Csa01g00164 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 7.4e-300 1026.5
Csa06g03720 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.8e-299 1024.6
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.4e-298 1021.5
Csa07g00478 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 2.0e-289 991.9
Csa05g00202 . 45 596 Trehalose Biosynthesis Gene Families AT4G24040 56.6 2.0e-190 662.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006557 1 3 1 1 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00202 Csa_Chr05 FPKM 1.291769 0.733846 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0