Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00223 ATGGAAGCTCTGTGGATTTTCCGCTTCGTTTTGGTTATGGGGTTGGTTTTTTCGCCTATTAATGGCGACCCAGTTGAAGATAAGCTAGCTTTGCTTGATTTTGTGAAGAATCTCCCTCACTCTCGCTCTCTTAATTGGAATGCGGCTTCTCCGGTTTGTCATTACTGGACTGGTATAACTTGTAGTCAAGATGAATCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGTTTTCACGGCCCGATTCCACCGAATACTCTCAGCCGGCTGTCGGCGCTGCAAATATTGAGTCTCAGATCCAATCGTATAACAGGGGATTTCCCTTTGGATTTCTCGAAGCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTCTGGAAGAATCTCGTCTTTGTGAATCTCTCTAATAATGGCTTCAATGGTCAAATTCCTAATTCACTTTCTAATCTAACTTCACTTACGGGTTTGAATCTGGCCAACAACTCTCTCTCAGGAGAAATACCTGACCTCCAAATCCCCCGATTGCAGGTTCTGGATTTGTCTAACAACAATCTGAGTGGGAGTTTGCCTGAATCTTTGCAGAGATTTCCAAGGTCTGTATTTGTAGGCAATAACATATCCTTCGGAAATTCTTTATCAAACAATCCTCCTGTACCCGCACCACTGCCTGTGTCGAATGAAAAGCCGAAGAAGTCTGGGGGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATATTGGGGCTTCTGGCATTTGGCTTTCTAATCCTTGTTTGCTTTTCAAGAAGGAAGAGGGAAGATGAATATTCTGGTGATCTTCAGAAAGGCGGAATGTCGCCAGAAAAAGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAAGGGTGCCATTATGCTTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACGGCTTATAAAGCAATTCTAGAGGATGCCACCATAGTTGTAGTTAAAAGGTTGAAAGATGTAAGTGCTGGGAAACGTGATTTTGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCACGAGAATGTGGCTGAATTGAAGGCCTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTTTGGTCAGGGAAGCGTCTCGGCAATGTTACACGGTAAACGCGGAGAGGAAAAAACCCCATTAGATTGGGACACGAGACTGAGAATTGCAGTTGGTGCAGCACGAGGAATCGCCCGTGTCCATGCCGAAAACGGCGGGAAGCTCGTCCATGGAAATGTGAAATCCTCAAACATATTTCTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACCATAACAAGCTCACTCTCTCCCCCTATATCTCGTGCTGCTGGTTACCGAGCCCCAGAAGTGACAGATACTCGCAAGGCAACACAAGCTTCAGATGTTTTCAGCTTTGGTGTCGTGCTCCTCGAGCTTCTAACCGGAAAGTCTCCAATCCACGCAACAGGTGGCGAAGAGATTGTCCATTTGGTTCGATGGGTTCATTCAGTTGTAAGAGAGGAGTGGACAGCTGAGGTATTTGATGTAGAGTTGATGAGGTATCCCAACATAGAGGAAGAAATGGTTGAGATGTTACAAATAGCCTTATCATGTGTGGCCAGGATACCTGATCAAAGACCGAAAATGCCGGAAATTGTGAAGATGATCGAAAACGTTCGACCAATGGAAGCCGAGAACCGACCTTCCACGAATCAATTAGAAAGTTCAATGCTGCCGCAAGCTGTTGAGACAGAAAATTCAACCACTCAGTGA 1887 44.57 MEALWIFRFVLVMGLVFSPINGDPVEDKLALLDFVKNLPHSRSLNWNAASPVCHYWTGITCSQDESRVIAVRLPGVGFHGPIPPNTLSRLSALQILSLRSNRITGDFPLDFSKLSNLSYLYLQFNNFSGPLPSNFSVWKNLVFVNLSNNGFNGQIPNSLSNLTSLTGLNLANNSLSGEIPDLQIPRLQVLDLSNNNLSGSLPESLQRFPRSVFVGNNISFGNSLSNNPPVPAPLPVSNEKPKKSGGLGEAALLGIIIAGGILGLLAFGFLILVCFSRRKREDEYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATIVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVAELKAYYYSKDEKLMVYDFFGQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMPEIVKMIENVRPMEAENRPSTNQLESSMLPQAVETENSTTQ* 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1334228 1338522 - CsaV3_5G002230.1 Csa05g00223 528610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00223 628 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515
Csa05g00223 628 PANTHER PROTEIN, PUTATIVE-RELATED 21 609 - -
Csa05g00223 628 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Csa05g00223 628 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Csa05g00223 628 PANTHER OS05G0588300 PROTEIN 21 609 - -
Csa05g00223 628 MobiDBLite consensus disorder prediction 602 628 - -
Csa05g00223 628 Gene3D Ribonuclease Inhibitor 25 235 IPR032675 -
Csa05g00223 628 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Csa05g00223 628 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00223 628 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Csa05g00223 628 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515
Csa05g00223 628 ProSiteProfiles Protein kinase domain profile. 326 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00223 628 MobiDBLite consensus disorder prediction 599 628 - -
Csa05g00223 628 Gene3D Transferase(Phosphotransferase) domain 1 402 620 - -
Csa05g00223 628 SUPERFAMILY L domain-like 37 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02181 Csa-Chr3:18942917 Csa05g00223 Csa-Chr5:1334228 0 transposed
Csa04g01704 Csa-Chr4:16425507 Csa05g00223 Csa-Chr5:1334228 0 transposed
Csa06g01121 Csa-Chr6:9313912 Csa05g00223 Csa-Chr5:1334228 0 transposed
Csa05g00074 Csa-Chr5:375984 Csa05g00223 Csa-Chr5:1334228 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78211 PF00069 Pkinase 1.80E-33 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00223 - - csv:101211836 1174.84