Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00225 ATGCCAGCCACAACACTTTCCCACTTTGCGTTTCATTCACCTCCCAACTTTCTTCCCACTTGTTTCATTTCTCCTAACTCTCCTTGCAGGAACTTCTCGCTTCATGATTCTATTCCCCTTCTTTTCAGGTTTTCAAGTTGCTGCCGGACAGCAACTACCAAACCGTGGTATTGGCGCAAAACAGAAGTGGTTTCAAAATATTACGATCACCAAGAACCTTGTCATCATGACTACAGTAGCCGTGAGGTATCTACAAGATCAATAACTATTCTGGATAATTGTCGTGCACCTGAAAAGCCATTAGCAAAGTACAGCTCAGCGGAGGGCATTCATGAAAATACAGATAACCAAAAATCTAGCAGTATATTCAGCAGTTCATTTTTGAAATTTATGCTCCTGTCTGGGTTCTTCATACTTCAAGACTCTCAGCATGCATTAGCTGGTTCAGATGTTGCTACTGGGTTGCAGTCAGTCCCACTTCTGGGAGACCTTGGTGATATTAGCACAGGTTTTGCTTCAGCGTTTTTGCTAATCTTTTTCTCAGAACTAGGGGACAAGACCTTTTTCATTGCAGCGCTTCTAGCAGCTAGGAACTCTGCTGCTACTGTTTTTACTGGAACTTTTGGTGCACTTGGGGCAATGACCATCATATCTGTTGTTCTCGGACGAACTTTTCACTACGTTGATGAGATTCTTCCATTCAGGCTTGGTGATAGTGATTTACCAGTTGATGATATTGCAGCTGTCTGTCTCTTGGTTTATTTTGGGGTTACAACATTGCTTGATGCCAGCTCAAGTGATGGACTAAAGGCAGAAGATGAGCAGAAGGAGGCAGAATTAGCTGTCTCCAAGTTCTCAGGAAATGGTGCCGGAATATTAGCTGCTGCCAGTACTGTCGTCAGCACCTTTGCATTAGTGTTTGTAGCTGAGTGGGGTGACAAGTCATTTTTCTCTACGATTGCCCTTGCTGCTGCTTCTTCACCCCTTGGAGTCATTGGTGGTGCACTAGCTGGTCATGGTGTTGCAACATTGCTTGCTGTTCTAGGAGGTTCTTTGCTAGGGACATTTTTATCAGAAAAGATTATCGCTTACGTTGGAGGAGTTCTTTTTCTCGTATTCGCTGCTGTAACTTTAGTAGAGATAGTAAACTAG 1152 43.49 MPATTLSHFAFHSPPNFLPTCFISPNSPCRNFSLHDSIPLLFRFSSCCRTATTKPWYWRKTEVVSKYYDHQEPCHHDYSSREVSTRSITILDNCRAPEKPLAKYSSAEGIHENTDNQKSSSIFSSSFLKFMLLSGFFILQDSQHALAGSDVATGLQSVPLLGDLGDISTGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFTGTFGALGAMTIISVVLGRTFHYVDEILPFRLGDSDLPVDDIAAVCLLVYFGVTTLLDASSSDGLKAEDEQKEAELAVSKFSGNGAGILAAASTVVSTFALVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHGVATLLAVLGGSLLGTFLSEKIIAYVGGVLFLVFAAVTLVEIVN* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1368619 1375888 + CsaV3_5G002250.1 Csa05g00225 528612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00225 383 PANTHER PROTEIN PAM71, CHLOROPLASTIC 76 383 - -
Csa05g00225 383 Pfam Uncharacterized protein family UPF0016 173 256 IPR001727 -
Csa05g00225 383 Pfam Uncharacterized protein family UPF0016 301 374 IPR001727 -
Csa05g00225 383 ProSitePatterns Uncharacterized protein family UPF0016 signature. 182 191 IPR001727 -
Csa05g00225 383 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 76 383 IPR001727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00225 - - - csv:101211177 730.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01136 Csa-Chr3:8951274 Csa05g00225 Csa-Chr5:1368619 5.05E-49 dispersed
Csa05g00225 Csa-Chr5:1368619 Csa06g00333 Csa-Chr6:2564688 9.89E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g70 . . . . . . . Bma14g00621 . . Cma02g01412 Cma15g01259 Car02g01183 Car15g01136 . . . . . . . . . . . . . . . . . Cone8ag0265 Cone12ag0270 . . . Csa05g00225 Chy09g01275 . . . . . . Bpe11g00647 . . . Cmo02g01441 Cmo15g01328 . . . . . . Bhi12g00170 . . Lac11g2031 Hepe06g1500 . Lcy12g1593 Cla01g00208 Cam01g0213 Cec01g0208 Cco01g0211 Clacu01g0208 Cmu01g0203 Cre09g2304 Lsi09g00196 . . Cme09g01818
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008642 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00225 Csa_Chr05 FPKM 16.732246 19.174086 19.1031 19.753202 16.081923 16.298582 16.086166 19.176315 18.180555 20.475594