Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00228 ATGAATGAAAAAACGGGTAGTATCGTCATAGACATCATCGAAACAAAACTTGAACCTCTATGGGCAAAATCTGGTGGAAAATTGGGAAACTCGAGCACTTTGTTAGGGATTAGGAGTGTTTGGAATTTTTGCAAAGAAGATAGAAATAGATTATTATTCTCATTCAAAGTTGGTTTGGCTGTTGTTTTGGTGTCTTTGCTTATACTTCTTCAAGCACCTTATGATGTGTTTGGAAGTAATATCATTTGGGCTATCATCACCGTGGCCATAATGTTCGAATATACAGTAGGTGCAACTTTCAATCGTGGTTTCAATAGGGCACTTGGAAGTTTGCTGGCTGGAATCTTGGCTATTGGGGTTGCTCAACTTGCTTTACTCACTGGCCCTGTTGGTGAACCCATTGTCATTGGCATCAGCATTTTCTTAGTTGGAAGTATAACAACGTTGATGAAGCAATGGCCAAGGCTAACTCCATACGAATATGGATTCAGAGTTATACTCTTCACTTATTGTTTGATAGTTGTTTCTGGTTATCGAATGGGGAATCCACTTAGAATTGCCATAGATCGTCTCTACTCTATCGCCATTGGAGCACTTGTTGCAGTTTTGGTAAATGTTCTTGTTTTTCCTATTTGGGCTGGTCATCAGCTCCATAATGATCTTGTCAATGCCTTCAACTCCATTGCTGATTCACTTCAAGAATGTGTGAAGAAGTATTTAGAAGATGAGGAATGGAAAAACATTGATCAAGAAGTACCATTGAAGGCTGTAATGGATGAGTTCCCAGATGAACCTGCCTACAAGAAATGCAAAGCCACTTTAAACTCTTCTTCAAAGTTTGACACTTTGGCGACATCGGCAAAATGGGAGCCGCCACATGGTAGATTCAAGCAATTCTTTTATCCATGGACAGAGTACGTTAAAGTTGGAGCAGTTTTGAGATACTGTGCTTATCAAGTTATGGCTCTTCATGGTGTCCTCCACTCTCAAATACAGGCTCCATATAACCTCAGAATCACATTCAAATCTGAGATTCAAGATGTAGCAAATCAAGCAGCAGAGCTAATGAGAAGTTTGGGCAAAGACATCGACAACATGAAACAATCCATCAAAATCTCTCACCTAAAGAATGTTCACAGCACAGCTGAGAAGCTCCAACGCGCCATTGACACTCACTCTTATCTCCTCACTCCCACTTGCGAAACCATAGGTCTCTCGACCACCTCGTCGAGCAACCTCGACAATCTTCCAAGCTTGTCAGCTGAGCTCGACAGCAATGGCTCCAAGAGAAGTTTAAACAAGCAGGATTCTCATGGTGTTGATTTGGTGAGGAAGCAGCAGTCGAGAAGGCAGCATTCGTGGCCGTTGAGGGAAATGGACGTGTTCGACGATGGCAGGTGTGTTGCCATCGAATTTCTGCCGAGGATGAGGAAGTTGGAGAGCACTGCAGCCATGTCACTGGCTAACTTTACTTCCTTGCTCATTGAGTTTGTCGCTAGGCTTGACTATTTGGTTGAAACAGTGGATGAGCTATCTAGGATGGCTAAGTTCAATGAAGAACATTGA 1566 42.34 MNEKTGSIVIDIIETKLEPLWAKSGGKLGNSSTLLGIRSVWNFCKEDRNRLLFSFKVGLAVVLVSLLILLQAPYDVFGSNIIWAIITVAIMFEYTVGATFNRGFNRALGSLLAGILAIGVAQLALLTGPVGEPIVIGISIFLVGSITTLMKQWPRLTPYEYGFRVILFTYCLIVVSGYRMGNPLRIAIDRLYSIAIGALVAVLVNVLVFPIWAGHQLHNDLVNAFNSIADSLQECVKKYLEDEEWKNIDQEVPLKAVMDEFPDEPAYKKCKATLNSSSKFDTLATSAKWEPPHGRFKQFFYPWTEYVKVGAVLRYCAYQVMALHGVLHSQIQAPYNLRITFKSEIQDVANQAAELMRSLGKDIDNMKQSIKISHLKNVHSTAEKLQRAIDTHSYLLTPTCETIGLSTTSSSNLDNLPSLSAELDSNGSKRSLNKQDSHGVDLVRKQQSRRQHSWPLREMDVFDDGRCVAIEFLPRMRKLESTAAMSLANFTSLLIEFVARLDYLVETVDELSRMAKFNEEH* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1391557 1395469 - CsaV3_5G002280.1 Csa05g00228 528615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00228 521 MobiDBLite consensus disorder prediction 429 447 - -
Csa05g00228 521 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 1 520 - -
Csa05g00228 521 Pfam Aluminium activated malate transporter 41 512 IPR020966 GO:0015743
Csa05g00228 521 PANTHER OS01G0221600 PROTEIN 1 520 - -
Csa05g00228 521 MobiDBLite consensus disorder prediction 417 447 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00228 K25841 ALMT; aluminum-activated malate transporter family protein - csv:101211429 987.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00228 Csa-Chr5:1391557 Csa05g02597 Csa-Chr5:27209828 2.46E-99 dispersed
Csa05g00228 Csa-Chr5:1391557 Csa01g00374 Csa-Chr1:2331927 2.46E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g68 . . . . . . . . . . Cma02g01415 . Car02g01185 . . . Cpe05g00367 . . . . . . . . . . . . . . . . Cone6ag0822 Cone9ag0822 . Csa05g00228 Chy09g01272 . . Blo19g00352 . . . . . . . Cmo02g01444 . . . . . . . Bhi12g00172 . . . . . . Cla01g00211 Cam01g0216 Cec01g0210 Cco01g0214 Clacu01g0211 Cmu01g0205 Cre09g2302 Lsi09g00199 . . Cme09g01815
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012902 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00228 Csa_Chr05 FPKM 29.244013 37.594517 40.906296 40.545979 26.579336 23.637016 28.687983 29.25415 29.998045 31.753693