Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00230 ATGGCTAAAAAGATTGTATTCTATTTAATTTCTTTAATTTTCTTCTTCTCTTTATTGGTTCTTTCACAATCCTTACCTCTTTCCACAAGAGGAAGATGGATTGTAGACTCTAAAACAGGCCAACGTGTGAAGCTAAGCTGTGTTAATTTGGCCTCTCATGCACAATCCATGTTGGCACAAGGTCTTGACAAACGAACATTGAAGGATTTAGCTAATGATATCATTAGTCGCGATTTTAACTGTGTACGCTTGACTTGGTCGACTCATATGTTCACTCGCTACTCCCACATGACTATCATTGATGTTCTAGACAATCTTGATATTCAAAATGTCAAAAGTGGAGTTCAAAAACACAACCCTAAGATGTTGAATATGACAGTGGATCATGCATTCAAAACTGTTGTCTATGGCTTGGGCAATGCAGGTCTCATGATTGTTTTGGACAACCACATTAGCCAGCCGAGATGGTGTTGCTCTCTCGATGATGGCAATGGCTTCTTTGGAGACCGTCATTTTGACACTCTTGAATGGCTTCAGGGCTTGGACTATGTTGCTAGACATTTCACTTGGCATTCTCAAGTGATAGGAATGAGCCTAAGAAACGAACTCCGAGGGCCATATACAAACATGGACAATTGGTACAAATACGTGAAGGAAGGAAGCCACTTGATCCACACAAAAAACCGTAAACTCCTAGTAATAATTTCAGGTATAACCTTCGATAACGATCTAAGCTTCCTAAAGAAAAAGTCATTAGGGTACAACTTGCACAATAAAGTAGTGTTGGAGGCACATTTGTACCCGTTCAGTGGGAGTGAGAAATTACCCGAAAGCAAGTTTGTGAAGAAGCCATTAAACATAGTATGCAACCAAGTGATGGAAAAATTCGAGAGAGAAGCTGGATTTGTGGTGAACATGGAGGATGAACCATATCCATTGTGGCTTAGTGAATTTGGGTACGATCTAAGGGGTGACAACAAGGCTCAAAACAGGTTCATGAGTTGCTTTTTGGCTCATATTGTTGCCAAGGATCTTGATTGGGCTTATTGGGCTTTTCAAGGAACTTACATGTATAGACAAGGTCAAGAAAGTGTCGATGAAACTTTTGGTGTCATGGATAGCACTTGGACTAATGATCGAAACCCTCAACTCAATCAAATGCTTCAACTTGCTAAAAGAATCAACCAAGATCCAAATTCGAATGCATCAATGTCATACATAATATTACATCCAGTATCGGGACAATGTATCAGATCAAATGGTCAAGGAGGAATTGTACTTGGTGATTGCTTGACGCCAACACACTGGACCCACAGCGGAGATGGAAGTTCAATGAAGTTGTCGAACGGGCAATGTTTGCAGTCGGCTGGAGATGGCAAACCCCTCATTGTCTCAGCCGAATGCTCCAGTGACGGAAGCAAATGGACGATGGCTTCAAAGGCTAAGCTTCAATTGGCCACCAAAAGCGGTGGAGAAAACTTTTGTTTAGAGAAGAAATCTAATACTAAAATTGTTGTGAAGAGATGCATTTGCCTTGAAGATGAGTTGAATTGCTTTAACGATCCTCAGCCCCACTTTGCCTTAGAAGCCACCGTCCAACTGCTTCCGTCACCAGAGCATTCGGCCGACACCACAGGCGGCTTCCCATCTCCGGCTGACTTCAAACACTGCCCGTTCCACAACTTCATCGGACTTCCATCTCCAGTATGGTCCCACAACGTCGGTGTCTCACAGTCACCTAGTTCAATTCCTCCCTTGCCATCTAGTTTGACACATTGCCCTGACACTGGATGTAGCATTATGTAG 1806 42.47 MAKKIVFYLISLIFFFSLLVLSQSLPLSTRGRWIVDSKTGQRVKLSCVNLASHAQSMLAQGLDKRTLKDLANDIISRDFNCVRLTWSTHMFTRYSHMTIIDVLDNLDIQNVKSGVQKHNPKMLNMTVDHAFKTVVYGLGNAGLMIVLDNHISQPRWCCSLDDGNGFFGDRHFDTLEWLQGLDYVARHFTWHSQVIGMSLRNELRGPYTNMDNWYKYVKEGSHLIHTKNRKLLVIISGITFDNDLSFLKKKSLGYNLHNKVVLEAHLYPFSGSEKLPESKFVKKPLNIVCNQVMEKFEREAGFVVNMEDEPYPLWLSEFGYDLRGDNKAQNRFMSCFLAHIVAKDLDWAYWAFQGTYMYRQGQESVDETFGVMDSTWTNDRNPQLNQMLQLAKRINQDPNSNASMSYIILHPVSGQCIRSNGQGGIVLGDCLTPTHWTHSGDGSSMKLSNGQCLQSAGDGKPLIVSAECSSDGSKWTMASKAKLQLATKSGGENFCLEKKSNTKIVVKRCICLEDELNCFNDPQPHFALEATVQLLPSPEHSADTTGGFPSPADFKHCPFHNFIGLPSPVWSHNVGVSQSPSSIPPLPSSLTHCPDTGCSIM* 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1405040 1409109 + CsaV3_5G002300.1 Csa05g00230 528617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00230 601 Gene3D Glycosidases 24 397 - -
Csa05g00230 601 Gene3D - 403 513 - -
Csa05g00230 601 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 8 524 - -
Csa05g00230 601 Pfam Cellulase (glycosyl hydrolase family 5) 63 352 IPR001547 GO:0004553|GO:0071704
Csa05g00230 601 SUPERFAMILY (Trans)glycosidases 25 392 IPR017853 -
Csa05g00230 601 SUPERFAMILY Ricin B-like lectins 402 509 IPR035992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00230 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] - csv:101211675 980.319
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00230 Csa-Chr5:1405040 Csa05g00526 Csa-Chr5:3373453 0 dispersed
Csa05g00230 Csa-Chr5:1405040 Csa05g00231 Csa-Chr5:1409194 0 tandem
Csa03g01771 Csa-Chr3:13295529 Csa05g00230 Csa-Chr5:1405040 1.38E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g57 . . . . . . . . . . Cma02g01417 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00230 Chy09g01269 . . . . . . . . . . Cmo02g01449 Cmo15g01324 . . . . . . Bhi12g00176 . . Lac11g2036 Hepe06g1504 . Lcy12g1598 Cla01g00217 Cam01g0224 Cec01g0215 Cco01g0223 Clacu01g0219 Cmu01g0212 Cre09g2296 Lsi09g00204 . . Cme09g01810
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00230 Csa_Chr05 FPKM 1.330311 1.718647 1.104464 1.372272 3.412242 2.733092 3.519209 1.273098 1.144543 1.289417