Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00240 ATGGAGCCGGCAGGTTTATTCGAATCCTCCATGAGATTTTTCTCTGATCAAGAACTCTGCTATGCTGATATTCTCACTCCTCAAGAGGTCGTGGCTAGAATTCAAGTAGCTGTCCTCAATTTTCTCAGAATTCTCAACTCCTCCTCTCCAGCCATCTCAAATCTTCCTCTGATTGATCGAAGATCGAGCAATAGCCGAGTGAGTCAAGGAATTTTGACAGATGATTCGTGGATATTCCTTTCGCATTCCTTTTGTACGAGGTCTTTGATGAGACCCAACGCCTCTAAGGCTTTTGTCAGAGTTTGGAAGCTGATGGAGATGTGCTCTCAGATTCTGATTCAGGATAAGAAAGTGACGCAGAGGGAGCTTTTCTATAAGCTGCTCTGTGATTCACCGGTTTATTTTTCGACTCAGTTGCATGTCAATAGGACAATTCAAGATGTTGTAGCCTTACTTCAATGTAGCCGTTACAGCCTTGGAATTATGGCATCTAGTAGGGGACTTGTCGCCGGCCGTCTACTGTTGCAGGAGCCTGAGCAAGAAGTTGTGGACTGCACTGCCTGTGGGTCTTCTGGATATCCCATTTCAGGTGACTTGGACTTGCTGCAGACGTTGACTCTGAAGACTGACGCTCGTTACATAATTGTAATCGAAAAGCATGCGATATTCCAACGTTTGGCAGATGATCGCGTTTTCAATCGCATTCCTAGTATTCTTATCACAGCCAAAGGATATCCAGACTTAGCCACAAGGTACTTTCTTCACAAAATTTGCAAAACGTTTTCGCATCTGCCAATGTTCGGCCTTGTTGATTGGAACCCTGCGGGATTGGCCATTTTATGCACCTTCAAATACGGAAGTATAGGGATGGGCTTGGAGGCATACAGATATGCTTGCAATGTTAAATGGTTGGGAGTACGAGGAGATGATTTACAACTGATACCACAAGAATCTCTGGTTCCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGCTGTCCTCAAAAATATTACAGGAGAACTATCGACAAGAGCTGACATTAATGGTTGAGAGAGGGCAAAAGGCTGAACTTGAAGCTTTGTACCACAATGGATTCGATTACTTGGAGAAGTACATAGTCAAAAAGATTATTCAATTTAGTTACATCTGA 1155 43.72 MEPAGLFESSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILNSSSPAISNLPLIDRRSSNSRVSQGILTDDSWIFLSHSFCTRSLMRPNASKAFVRVWKLMEMCSQILIQDKKVTQRELFYKLLCDSPVYFSTQLHVNRTIQDVVALLQCSRYSLGIMASSRGLVAGRLLLQEPEQEVVDCTACGSSGYPISGDLDLLQTLTLKTDARYIIVIEKHAIFQRLADDRVFNRIPSILITAKGYPDLATRYFLHKICKTFSHLPMFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLLSSKILQENYRQELTLMVERGQKAELEALYHNGFDYLEKYIVKKIIQFSYI* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1471911 1475640 + CsaV3_5G002400.1 Csa05g00240 528627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00240 384 Gene3D - 18 164 IPR036388 -
Csa05g00240 384 CDD TOPRIM_TopoIIB_SPO 212 369 IPR034136 -
Csa05g00240 384 Gene3D - 165 384 - -
Csa05g00240 384 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 16 383 - -
Csa05g00240 384 PRINTS DNA topoisomerase VI subunit A family signature 138 155 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa05g00240 384 PRINTS DNA topoisomerase VI subunit A family signature 156 171 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa05g00240 384 PRINTS DNA topoisomerase VI subunit A family signature 214 231 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa05g00240 384 PRINTS DNA topoisomerase VI subunit A family signature 238 259 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa05g00240 384 PRINTS DNA topoisomerase VI subunit A family signature 271 287 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa05g00240 384 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 16 383 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa05g00240 384 Pfam Type IIB DNA topoisomerase 96 161 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Csa05g00240 384 SUPERFAMILY DNA topoisomerase IV, alpha subunit 96 384 IPR036078 GO:0003677|GO:0005694
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00240 K10878 SPO11; meiotic recombination protein SPO11 - csv:101213596 755.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00240 Csa-Chr5:1471911 Csa07g00936 Csa-Chr7:8079632 4.42E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g44 . . . . . . . Bma14g00597 . . Cma02g01424 . Car02g01193 . . . Cpe05g00362 . . . . . . . . . . . . . . Cone8ag0276 . . . . Csa05g00240 . . . . . . . Bpe11g00672 . . . Cmo02g01458 . . . . . . . Bhi12g00322 . . . . . Lcy12g1610 . . . . . . . . . . Cme09g01800
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006132 0 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00240 Csa_Chr05 FPKM 19.614796 21.540289 22.71484 20.962896 13.073642 14.177769 14.702754 8.644522 8.461751 8.539525