Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00243 ATGAGGAAAGTTGTGGTGAAATTGGACTTACATGATGACAAAGGGAAACAAAAGGCTTTAAAATCTGTCTCTGGTCTTCAAGGAATTGAATCGATCGCCATGGACATGAAGGACAAGAAGCTAACAGTAATTGGGGATGTTGATCCAGTTGATGTAGCTGACAAGGTTCGAAAGCATTGGCCGAACGCCGATATCATCAGCGTCGGCCCAGCGAAAGAAGAGAAGGCCGCACCACCAAAAGTGACAAAGCCAAAGGAAAAGAGTGAAAGTGAAAAAATTGAAGATCTTCTTAATTGGTACAAAAGCCATGGTCATATTCAATATGGAGCTCCCAATTACCGTGTGTATGGTATAGAGGAGAATCCTAATTCTTGTGTCATTTCTTGA 387 41.86 MRKVVVKLDLHDDKGKQKALKSVSGLQGIESIAMDMKDKKLTVIGDVDPVDVADKVRKHWPNADIISVGPAKEEKAAPPKVTKPKEKSESEKIEDLLNWYKSHGHIQYGAPNYRVYGIEENPNSCVIS* 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1483491 1484881 - CsaV3_5G002430.1 Csa05g00243 528630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00243 128 MobiDBLite consensus disorder prediction 67 91 - -
Csa05g00243 128 MobiDBLite consensus disorder prediction 76 91 - -
Csa05g00243 128 SUPERFAMILY HMA, heavy metal-associated domain 2 61 IPR036163 GO:0046872
Csa05g00243 128 Pfam Heavy-metal-associated domain 6 59 IPR006121 GO:0046872
Csa05g00243 128 Gene3D - 1 74 - -
Csa05g00243 128 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 1 127 - -
Csa05g00243 128 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 1 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00243 - - - bhj:120068116 179.874
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00863 Csa-Chr3:7251170 Csa05g00243 Csa-Chr5:1483491 9.39E-32 dispersed
Csa03g04690 Csa-Chr3:40747910 Csa05g00243 Csa-Chr5:1483491 3.94E-17 dispersed
Csa04g00608 Csa-Chr4:4008731 Csa05g00243 Csa-Chr5:1483491 1.33E-28 dispersed
Csa05g00103 Csa-Chr5:521724 Csa05g00243 Csa-Chr5:1483491 7.72E-33 dispersed
Csa05g00243 Csa-Chr5:1483491 Csa06g00088 Csa-Chr6:568223 1.15E-27 dispersed
Csa06g03269 Csa-Chr6:27493939 Csa05g00243 Csa-Chr5:1483491 9.51E-11 dispersed
Csa05g00242 Csa-Chr5:1480408 Csa05g00243 Csa-Chr5:1483491 1.65E-45 tandem
Csa05g00243 Csa-Chr5:1483491 Csa05g00244 Csa-Chr5:1487722 1.51E-46 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g770 . . Bda05g00094 . Bpe03g00155 . Bma10g01254 Bma14g02042 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0061 . Csa05g00243 . . Blo07g00373 Blo09g00061 . . . . . . . . . . . . . . . Bhi12g00777 . . . . . Lcy12g0059 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000207 7 7 3 10 7 4 5 6 5 3 4 5 6 7 6 6 5 9 5 5 7 5 5 4 6 4 5 12 6 6 175
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00243 Csa_Chr05 FPKM 0.191149 0.423931 1.225712 1.195874 7.493776 6.738349 7.12527 1.098965 0.696171 0.293878