Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00251 | ATGGCTACTAAAGAATCGAGTTCTACCACTGCCACTGAAGGCAAGATTAAAGGCGTTCTTACTCATGGTGGGCGATATGTGCAGTATAATGTGTACGGTAACTTGTTTGAGGTTTCAGCCAAGTATGTTCCTCCTTTGCGACCTATTGGTAGAGGTGCTTATGGTCTTGTTTGTGCTGCTGTAAATTCAGAGACCCATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCATTTGATAACATAATCGACGCCAAAAGGACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAAAATATTATTGCTATTAGAGACATCATTAGGCCGCCAAAAAGAGAGGTTTTTAATGATGTGTATATTGTTTACGAATTGATGGACACTGATCTTCATCAAATAATTCGTTCTGACCAACCACTGACGGATGATCATTGCCAGTACTTTTTATATCAGTTATTGCGTGGGCTGAAATATGTACACTCGGCCAAGGTCCTGCACCGTGATCTCAAGCCGAGCAACCTGCTTCTGAATGCAAATTGCGACCTTAAAATTGGAGACTTTGGATTGGCAAGGACGACTTCTGAAACCGACTTCATGACTGAATATGTGGTTACTCGCTGGTACCGAGCACCAGAATTGCTCCTCAATTGTTCAGAATACACTGCTGCTATTGATGTTTGGTCTGTAGGATGCATACTTGGTGAGATAATGACCAGAGAACCTCTCTTCCCTGGCAAAGATTATGTTCATCAACTCAGACTTATAACTGAGCTACTAGGATCACCAGATGATGCCAGCCTAGGATTTCTCCGAAGTGATAATGCTCGAAGATATGTCAAGCAGCTTCCACAATACAGAAAACAACAATTCTCAGCTAGATTTCCCAACATGTCTCCATCTGCCCTCGATCTTCTCGAAAAGATGCTCGTATTTGATCCCAACAAACGCATCACAGTGGAGGAAGCACTTTGTCACCCATACTTGCAATCTCTTCACGACATCAATGACGAGCCAGTCTGTGCCAGGCCTTTCAATTTTGATTTCGAGCAACCGTCGTGCACTGAAGAGCATATTAAAGAACTGATCTGGAAAGAATCCGTGAGGTTCAACCCCGACGAATCCGCTAGGAGGACGACTCTTTGCGTTTGA | 1152 | 43.06 | MATKESSSTTATEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQPLTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSARFPNMSPSALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCARPFNFDFEQPSCTEEHIKELIWKESVRFNPDESARRTTLCV* | 384 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1523550 | 1527973 | + | CsaV3_5G002510.1 | Csa05g00251 | 528638 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00251 | 383 | SMART | serkin_6 | 43 | 329 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g00251 | 383 | Gene3D | Transferase(Phosphotransferase) domain 1 | 127 | 356 | - | - | |
Csa05g00251 | 383 | Pfam | Protein kinase domain | 47 | 329 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g00251 | 383 | ProSitePatterns | Protein kinases ATP-binding region signature. | 49 | 73 | IPR017441 | GO:0005524 | |
Csa05g00251 | 383 | ProSitePatterns | MAP kinase signature. | 78 | 181 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Csa05g00251 | 383 | Gene3D | Phosphorylase Kinase; domain 1 | 26 | 366 | - | - | |
Csa05g00251 | 383 | ProSiteProfiles | Protein kinase domain profile. | 43 | 329 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g00251 | 383 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 18 | 374 | - | - | |
Csa05g00251 | 383 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 165 | 177 | IPR008271 | GO:0004672|GO:0006468 | |
Csa05g00251 | 383 | CDD | STKc_TEY_MAPK | 36 | 372 | - | - | |
Csa05g00251 | 383 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED | 18 | 374 | - | - | |
Csa05g00251 | 383 | SUPERFAMILY | Protein kinase-like (PK-like) | 46 | 337 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00251 | Csa-Chr5:1523550 | Csa06g00543 | Csa-Chr6:4664720 | 1.18E-115 | dispersed | |
Csa01g01274 | Csa-Chr1:7989598 | Csa05g00251 | Csa-Chr5:1523550 | 0 | transposed | |
Csa02g02080 | Csa-Chr2:18979563 | Csa05g00251 | Csa-Chr5:1523550 | 3.94E-56 | transposed | |
Csa04g00548 | Csa-Chr4:3646885 | Csa05g00251 | Csa-Chr5:1523550 | 1.57E-145 | transposed | |
Csa06g02048 | Csa-Chr6:18328621 | Csa05g00251 | Csa-Chr5:1523550 | 0 | transposed | |
Csa06g03398 | Csa-Chr6:28159782 | Csa05g00251 | Csa-Chr5:1523550 | 2.34E-13 | transposed | |
Csa05g00251 | Csa-Chr5:1523550 | Csa06g00083 | Csa-Chr6:532725 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78212 | PF00069 | Pkinase | 6.20E-71 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00251 | - | - | csv:101214254 | 776.163 |