Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00251 ATGGCTACTAAAGAATCGAGTTCTACCACTGCCACTGAAGGCAAGATTAAAGGCGTTCTTACTCATGGTGGGCGATATGTGCAGTATAATGTGTACGGTAACTTGTTTGAGGTTTCAGCCAAGTATGTTCCTCCTTTGCGACCTATTGGTAGAGGTGCTTATGGTCTTGTTTGTGCTGCTGTAAATTCAGAGACCCATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCATTTGATAACATAATCGACGCCAAAAGGACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAAAATATTATTGCTATTAGAGACATCATTAGGCCGCCAAAAAGAGAGGTTTTTAATGATGTGTATATTGTTTACGAATTGATGGACACTGATCTTCATCAAATAATTCGTTCTGACCAACCACTGACGGATGATCATTGCCAGTACTTTTTATATCAGTTATTGCGTGGGCTGAAATATGTACACTCGGCCAAGGTCCTGCACCGTGATCTCAAGCCGAGCAACCTGCTTCTGAATGCAAATTGCGACCTTAAAATTGGAGACTTTGGATTGGCAAGGACGACTTCTGAAACCGACTTCATGACTGAATATGTGGTTACTCGCTGGTACCGAGCACCAGAATTGCTCCTCAATTGTTCAGAATACACTGCTGCTATTGATGTTTGGTCTGTAGGATGCATACTTGGTGAGATAATGACCAGAGAACCTCTCTTCCCTGGCAAAGATTATGTTCATCAACTCAGACTTATAACTGAGCTACTAGGATCACCAGATGATGCCAGCCTAGGATTTCTCCGAAGTGATAATGCTCGAAGATATGTCAAGCAGCTTCCACAATACAGAAAACAACAATTCTCAGCTAGATTTCCCAACATGTCTCCATCTGCCCTCGATCTTCTCGAAAAGATGCTCGTATTTGATCCCAACAAACGCATCACAGTGGAGGAAGCACTTTGTCACCCATACTTGCAATCTCTTCACGACATCAATGACGAGCCAGTCTGTGCCAGGCCTTTCAATTTTGATTTCGAGCAACCGTCGTGCACTGAAGAGCATATTAAAGAACTGATCTGGAAAGAATCCGTGAGGTTCAACCCCGACGAATCCGCTAGGAGGACGACTCTTTGCGTTTGA 1152 43.06 MATKESSSTTATEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQPLTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSARFPNMSPSALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCARPFNFDFEQPSCTEEHIKELIWKESVRFNPDESARRTTLCV* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1523550 1527973 + CsaV3_5G002510.1 Csa05g00251 528638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00251 383 SMART serkin_6 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00251 383 Gene3D Transferase(Phosphotransferase) domain 1 127 356 - -
Csa05g00251 383 Pfam Protein kinase domain 47 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00251 383 ProSitePatterns Protein kinases ATP-binding region signature. 49 73 IPR017441 GO:0005524
Csa05g00251 383 ProSitePatterns MAP kinase signature. 78 181 IPR003527 GO:0004707|GO:0005524|GO:0006468
Csa05g00251 383 Gene3D Phosphorylase Kinase; domain 1 26 366 - -
Csa05g00251 383 ProSiteProfiles Protein kinase domain profile. 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00251 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 374 - -
Csa05g00251 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Csa05g00251 383 CDD STKc_TEY_MAPK 36 372 - -
Csa05g00251 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 18 374 - -
Csa05g00251 383 SUPERFAMILY Protein kinase-like (PK-like) 46 337 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00251 Csa-Chr5:1523550 Csa06g00543 Csa-Chr6:4664720 1.18E-115 dispersed
Csa01g01274 Csa-Chr1:7989598 Csa05g00251 Csa-Chr5:1523550 0 transposed
Csa02g02080 Csa-Chr2:18979563 Csa05g00251 Csa-Chr5:1523550 3.94E-56 transposed
Csa04g00548 Csa-Chr4:3646885 Csa05g00251 Csa-Chr5:1523550 1.57E-145 transposed
Csa06g02048 Csa-Chr6:18328621 Csa05g00251 Csa-Chr5:1523550 0 transposed
Csa06g03398 Csa-Chr6:28159782 Csa05g00251 Csa-Chr5:1523550 2.34E-13 transposed
Csa05g00251 Csa-Chr5:1523550 Csa06g00083 Csa-Chr6:532725 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78212 PF00069 Pkinase 6.20E-71 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00251 - - csv:101214254 776.163