Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00252 ATGACGACGGTGATTTCGGCCGTTGCAACCGCCGGGCCGTACCGGTATGATTACGGGAGGTTGTTTCAACGCCCGGCCGCCGGAGCTCCGAGTCCAGGTTTTCCATGGCGGTGTTTTGCGAAACAGAGGTGGAGAAGGAGAAGATTGATGGTTGTGAAGATGAAGAAGAAGAAAAGTGAAGAAGATGAAATGGTTAAGGAATTGAAAATGAGTGTGGAGGAGAAAATGGGGAAGAAGAAAGCAGAAAGAGAGGGTTATTTGATAGCTGCAATTGTTTCGAGCTTTGGGATCACTTCAATGGCCGCCATCGCTGTTTATTACCGTTTCTCTTCCCAAATAATGGAGGGCGGAGAATTTCCACTTTTAGAAATGTTCGGCACTTTTGTACTATCTATTGGTTCTGCTGTGGGCATGGAATTTTGGGCGAGATGGGCTCACAAAGAGCTATGGCATGCTTCGTTATGGGATATGCATGAGTCTCATCACAAGCCGAGGGTTGGAGCATTTGAAAAGAACGATGTGTTTGCAATTATAAACGCGATTCCAGCCATTGCTCTTCTTTCTTTCGGCCTCTTCAATCAAGGCTTCTTTCCCGGCCTTTGTTTTGGTGCCGGTTTGGGAATTACGGTGTTTGGGATGGCCTACATGTTCGTCCACGATGGCCTCGTTCACCGTCGTTTCCCCGTGGGTCCGATAGCCGCTGTCCCCTACTTACGACGTGTCGCTGCTGCTCATCATATCCATCATACGGATAAATTTGACGGAGTTCCATATGGGTTGTTTTTAGGACCCAAGGAACTGGAAGAAGTGGATGGCGAGGAAGAGCTGCAGAAGGAAATTAGGAGGAGAAAGGTTTACAGAAATTAA 867 47.64 MTTVISAVATAGPYRYDYGRLFQRPAAGAPSPGFPWRCFAKQRWRRRRLMVVKMKKKKSEEDEMVKELKMSVEEKMGKKKAEREGYLIAAIVSSFGITSMAAIAVYYRFSSQIMEGGEFPLLEMFGTFVLSIGSAVGMEFWARWAHKELWHASLWDMHESHHKPRVGAFEKNDVFAIINAIPAIALLSFGLFNQGFFPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIAAVPYLRRVAAAHHIHHTDKFDGVPYGLFLGPKELEEVDGEEELQKEIRRRKVYRN* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1528968 1532711 + CsaV3_5G002520.1 Csa05g00252 528639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00252 288 PANTHER HYDROXYLASE, PUTATIVE, EXPRESSED-RELATED 51 284 - -
Csa05g00252 288 Pfam Fatty acid hydroxylase 135 261 IPR006694 GO:0005506|GO:0008610|GO:0016491
Csa05g00252 288 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 51 284 IPR045019 GO:0016491
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01745 Csa05g00252 CCT
Csa03g01745 Csa05g00252 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01745 Csa-Chr3:13069657 Csa05g00252 Csa-Chr5:1528968 7.18E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00252 K15746 - csv:101214325 545.428